Ubuntu
bwa package

bwa 0.7.17-1ubuntu0.1 source package in Ubuntu

Changelog

bwa (0.7.17-1ubuntu0.1) bionic-security; urgency=medium

  * SECURITY UPDATE: Stack buffer overflow via a long sequence name in a .alt
    file
    - debian/patches/CVE-2019-10269.patch: exit if .alt is malformatted
    - CVE-2019-10269

 -- Mike Salvatore <email address hidden>  Mon, 05 Aug 2019 11:36:30 -0400

Upload details

Uploaded by:
Mike Salvatore
Uploaded to:
Bionic
Original maintainer:
Ubuntu Developers
Architectures:
amd64 kfreebsd-amd64
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Bionic updates universe science
Bionic security universe science

Builds

Bionic: [FULLYBUILT] amd64

Downloads

File Size SHA-256 Checksum
bwa_0.7.17.orig.tar.gz 227.1 KiB 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd
bwa_0.7.17-1ubuntu0.1.debian.tar.xz 8.6 KiB 7ba235bdf335524ea3c4491a5887790f6859c061efea0abbca41fe4c8052b7fa
bwa_0.7.17-1ubuntu0.1.dsc 2.2 KiB 578442dbab1deb1f60fb5f8c7b1f9f86e303ceea2db25d2607c3dd6381d008a6

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Binary packages built by this source

bwa: Burrows-Wheeler Aligner

 BWA is a software package for mapping low-divergent sequences against
 a large reference genome, such as the human genome. It consists of
 three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first
 algorithm is designed for Illumina sequence reads up to 100bp, while
 the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM
 and BWA-SW share similar features such as long-read support and split
 alignment, but BWA-MEM, which is the latest, is generally recommended
 for high-quality queries as it is faster and more accurate. BWA-MEM
 also has better performance than BWA-backtrack for 70-100bp Illumina
 reads.

bwa-dbgsym: debug symbols for bwa
libbwa-dev: Burrows-Wheeler Aligner source files

 BWA is a software package for mapping low-divergent sequences against
 a large reference genome, such as the human genome. It consists of
 three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first
 algorithm is designed for Illumina sequence reads up to 100bp, while
 the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM
 and BWA-SW share similar features such as long-read support and split
 alignment, but BWA-MEM, which is the latest, is generally recommended
 for high-quality queries as it is faster and more accurate. BWA-MEM
 also has better performance than BWA-backtrack for 70-100bp Illumina
 reads.
 .
 This package contains the source files for use in other programs.