RUN: /bin/echo ['echo', 'Forking build subprocess...']
Forking build subprocess...
RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '608655-1538507', '/home/buildd/filecache-default/c4a20f9646cd692e75c852484b97b0f2771281a4']
Synching the system clock with the buildd NTP service...
15 May 12:32:17 ntpdate[10198]: adjust time server 10.122.37.1 offset 0.000067 sec
Unpacking chroot for build 608655-1538507
RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '608655-1538507']
Mounting chroot for build 608655-1538507
RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '608655-1538507', 'universe']
Attempting OGRE for universe in build-608655-1538507
RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '608655-1538507', 'deb http://ftpmaster.internal/ubuntu intrepid main restricted universe']
Overriding sources.list in build-608655-1538507
RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '608655-1538507']
Updating debian chroot for build 608655-1538507
Get:1 http://ftpmaster.internal intrepid Release.gpg [191B]
Get:2 http://ftpmaster.internal intrepid Release [65.9kB]
Get:3 http://ftpmaster.internal intrepid/main Packages [1195kB]
Get:4 http://ftpmaster.internal intrepid/restricted Packages [6986B]
Get:5 http://ftpmaster.internal intrepid/universe Packages [4533kB]
Fetched 5801kB in 4s (1229kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  cpp-4.3 g++-4.3 gcc-4.3 gcc-4.3-base libgmp3c2 libmpfr1ldbl
  libstdc++6-4.3-dev
The following packages will be upgraded:
  apt base-files base-passwd bash binutils bsdutils ccache cpp cpp-4.2 debconf
  debconf-english findutils g++ g++-4.2 gcc gcc-4.2 gcc-4.2-base grep hostname
  lib64gcc1 libacl1 libattr1 libc6 libc6-amd64 libc6-dev libgcc1 libgomp1
  libslang2 libstdc++6 libstdc++6-4.2-dev make makedev mawk mount patch perl
  perl-base perl-modules python2.5-minimal sed tar util-linux zlib1g

Extracting templates from packages: 60%
Extracting templates from packages: 100%
Preconfiguring packages ...
43 upgraded, 7 newly installed, 0 to remove and 0 not upgraded.
Need to get 0B/47.7MB of archives.
After this operation, 41.3MB of additional disk space will be used.
(Reading database ... 9538 files and directories currently installed.)
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 Removing any system startup links for /etc/init.d/makedev ...
   /etc/rc1.d/K20makedev
   /etc/rc2.d/S20makedev
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Removing old gcc doc directory.
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Setting up libgmp3c2 (2:4.2.2+dfsg-1ubuntu2) ...

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Setting up cpp-4.3 (4.3.0-4ubuntu1) ...
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Setting up binutils (2.18.50.20080509-0ubuntu1) ...

Setting up ccache (2.4-15) ...
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Setting up libgomp1 (4.3.0-4ubuntu1) ...

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Setting up cpp-4.2 (4.2.3-4ubuntu1) ...
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Setting up make (3.81-4) ...
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Processing triggers for libc6 ...
ldconfig deferred processing now taking place
RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '608655-1538507', '--nolog', '--batch', '--archive=ubuntu', '-A', '--purpose=PRIMARY', '--dist=intrepid', '--comp=universe', 'dialign-t_1.0.0-1.dsc']
Initiating build 
Automatic build of dialign-t_1.0.0-1 on palmer by sbuild/i386 1.170.5
Build started at 20080515-1233
******************************************************************************
dialign-t_1.0.0-1.dsc exists in cwd
** Using build dependencies supplied by package:
Build-Depends: debhelper (>= 5), cdbs
Checking for already installed source dependencies...
debhelper: missing
cdbs: missing
Checking for source dependency conflicts...
  /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  g++-4.2 lib64gcc1 libc6-amd64 libstdc++6-4.2-dev
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
  autoconf automake1.7 autotools-dev bsdmainutils fdupes file gettext
  gettext-base groff-base html2text ifupdown intltool intltool-debian
  libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools
  netbase po-debconf update-inetd
Suggested packages:
  autobook autoconf-archive autoconf-doc autoconf2.13 gnu-standards libtool
  vacation wamerican wordlist whois devscripts doc-base dh-make cvs
  gettext-doc groff iproute dhcp3-client dhcp-client ppp libio-socket-ssl-perl
  less www-browser
Recommended packages:
  automake automaken curl wget lynx libcompress-zlib-perl libhtml-format-perl
  libmailtools-perl libmail-box-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake1.7 autotools-dev bsdmainutils cdbs debhelper fdupes file
  gettext gettext-base groff-base html2text ifupdown intltool intltool-debian
  libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl
  libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools
  netbase po-debconf update-inetd
dpkg-preconfigure: unable to re-open stdin: 
0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded.
Need to get 0B/8919kB of archives.
After this operation, 29.6MB of additional disk space will be used.
Selecting previously deselected package gettext-base.
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Setting up gettext-base (0.17-2ubuntu1) ...

Setting up net-tools (1.60-19ubuntu1) ...
Setting up ifupdown (0.6.8ubuntu8) ...
ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces
ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces

Setting up update-inetd (4.30) ...

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Setting up libwww-perl (5.812-1) ...
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Setting up man-db (2.5.2-1) ...
Building database of manual pages ...

Setting up m4 (1.4.11-1) ...

Setting up autoconf (2.61-7) ...

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Setting up automake1.7 (1.7.9-9) ...

Setting up html2text (1.3.2a-3build2) ...

Setting up gettext (0.17-2ubuntu1) ...

Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.12.1) ...

Setting up debhelper (7.0.8ubuntu1) ...
Setting up fdupes (1.50-PR2-1) ...
Setting up intltool (0.37.1-1ubuntu1) ...
Setting up cdbs (0.4.52ubuntu1) ...

Processing triggers for libc6 ...
ldconfig deferred processing now taking place
Checking correctness of source dependencies...
Toolchain package versions: libc6-dev_2.8~20080505-0ubuntu3 make_3.81-4 dpkg-dev_1.14.16.6ubuntu3 gcc-4.3_4.3.0-4ubuntu1 g++-4.3_4.3.0-4ubuntu1 binutils_2.18.50.20080509-0ubuntu1 libstdc++6_4.3.0-4ubuntu1 libstdc++6-4.3-dev_4.3.0-4ubuntu1
------------------------------------------------------------------------------
sh: gcc: not found
dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation)
gpg: Signature made Wed May  7 06:16:07 2008 BST using DSA key ID BAFEC7F2
gpg: Can't check signature: public key not found
dpkg-source: extracting dialign-t in dialign-t-1.0.0
dpkg-source: unpacking dialign-t_1.0.0.orig.tar.gz
dpkg-source: applying /home/buildd/build-608655-1538507/dialign-t_1.0.0-1.diff.gz
dpkg-buildpackage: set CPPFLAGS to default value: 
dpkg-buildpackage: set CFLAGS to default value: -g -O2
dpkg-buildpackage: set CXXFLAGS to default value: -g -O2
dpkg-buildpackage: set FFLAGS to default value: -g -O2
dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions
dpkg-buildpackage: source package dialign-t
dpkg-buildpackage: source version 1.0.0-1
dpkg-buildpackage: host architecture i386
 /usr/bin/fakeroot debian/rules clean
test -x debian/rules
dh_testroot
dh_clean 
/usr/bin/make  -C /build/buildd/dialign-t-1.0.0/source CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions"  -k clean
make[1]: Entering directory `/build/buildd/dialign-t-1.0.0/source'
rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack  museq dialign-tx
make[1]: Leaving directory `/build/buildd/dialign-t-1.0.0/source'
rm -f debian/stamp-makefile-build
 debian/rules build
test -x debian/rules
mkdir -p "/build/buildd/dialign-t-1.0.0/source"
/usr/bin/make  -C /build/buildd/dialign-t-1.0.0/source CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions"  
make[1]: Entering directory `/build/buildd/dialign-t-1.0.0/source'
gcc -g -O2 -g -Wall -O2   -c -o museq.o museq.c
museq.c: In function 'main':
museq.c:273: warning: implicit declaration of function 'free_alignment'
museq.c:94: warning: 'pdist' may be used uninitialized in this function
museq.c:93: warning: 'in_seq_col' may be used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o parameters.o parameters.c
gcc -g -O2 -g -Wall -O2   -c -o io.o io.c
io.c: In function 'read_anchors':
io.c:529: warning: format '%li' expects type 'long int *', but argument 3 has type 'int *'
io.c:529: warning: format '%li' expects type 'long int *', but argument 4 has type 'int *'
io.c:529: warning: format '%li' expects type 'long int *', but argument 5 has type 'int *'
io.c:529: warning: format '%li' expects type 'long int *', but argument 6 has type 'int *'
io.c:529: warning: format '%li' expects type 'long int *', but argument 7 has type 'int *'
io.c: In function 'read_fasta':
io.c:411: warning: 'data_maxlen' may be used uninitialized in this function
io.c:410: warning: 'slen' may be used uninitialized in this function
io.c:409: warning: 'data' may be used uninitialized in this function
io.c:396: warning: 'seq' may be used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o diag.o diag.c
diag.c: In function 'find_diags_guided':
diag.c:739: warning: statement with no effect
diag.c:535: warning: unused variable 'mstatus'
diag.c:518: warning: unused variable 'score1'
diag.c:517: warning: unused variable 'cons_maxd'
diag.c:513: warning: unused variable 'hasAli'
diag.c: In function 'find_diags_dyn':
diag.c:1329: warning: 'ap' may be used uninitialized in this function
diag.c: In function 'find_diags_dialign':
diag.c:1005: warning: 'ap' may be used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o alig.o alig.c
alig.c: In function 'free_alignment':
alig.c:145: warning: unused variable 'tpos'
alig.c:144: warning: unused variable 'o_apos'
alig.c: In function 'align_diag':
alig.c:594: warning: unused variable 'ttim'
alig.c:593: warning: unused variable 'dgc_next'
alig.c:593: warning: unused variable 'dgc'
alig.c:585: warning: unused variable 'score1'
alig.c:584: warning: unused variable 'a2'
alig.c:584: warning: unused variable 'a1'
alig.c:583: warning: unused variable 'smatrixlen'
alig.c:582: warning: unused variable 'data2'
alig.c:581: warning: unused variable 'data1'
alig.c:580: warning: unused variable 'sdata'
alig.c:579: warning: unused variable 'c2n'
alig.c: In function 'prepare_alignment':
alig.c:981: warning: 'max' may be used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o assemble.o assemble.c
assemble.c: In function 'fit_fpos_diag':
assemble.c:106: warning: unused variable 'ep1'
assemble.c: In function 'guided_aligner_rec':
assemble.c:911: warning: unused variable 'survive'
assemble.c:865: warning: unused variable 'changed'
assemble.c:853: warning: unused variable 'l2'
assemble.c:853: warning: unused variable 'l1'
assemble.c:853: warning: unused variable 'l'
assemble.c: In function 'guided_aligner':
assemble.c:1321: warning: unused variable 'tdg'
assemble.c:1321: warning: unused variable 'dg'
assemble.c: In function 'confl_diag':
assemble.c:606: warning: 'sF2' may be used uninitialized in this function
assemble.c: In function 'adapt_diag':
assemble.c:187: warning: 'succF' may be used uninitialized in this function
assemble.c:187: warning: 'predF' may be used uninitialized in this function
assemble.c: In function 'simple_aligner':
assemble.c:423: warning: 'tclock' may be used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o prob.o prob.c
prob.c: In function 'calc_score_dist':
prob.c:157: warning: 'sq1' is used uninitialized in this function
prob.c:158: warning: 'sq2' is used uninitialized in this function
gcc -g -O2 -g -Wall -O2   -c -o orf.o orf.c
gcc -g -O2 -g -Wall -O2   -c -o translate.o translate.c
translate.c: In function 'retranslate':
translate.c:599: warning: control reaches end of non-void function
translate.c: In function 'inverse':
translate.c:464: warning: control reaches end of non-void function
translate.c: In function 'translate':
translate.c:453: warning: control reaches end of non-void function
rm -f ./museq
gcc -o ./museq \
	./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o  \
	-pipe -Wall -lm 
mv museq dialign-tx
make[1]: Leaving directory `/build/buildd/dialign-t-1.0.0/source'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
 /usr/bin/fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_clean -k 
dh_installdirs -A 
mkdir -p "/build/buildd/dialign-t-1.0.0/source"
DEB_MAKE_CHECK_TARGET unset, not running checks
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
dh_installdirs -pdialign-tx-data 
dh_installdocs -pdialign-tx-data   
dh_installexamples -pdialign-tx-data 
dh_installman -pdialign-tx-data  
dh_installinfo -pdialign-tx-data  
dh_installmenu -pdialign-tx-data 
dh_installcron -pdialign-tx-data 
dh_installinit -pdialign-tx-data   
dh_installdebconf -pdialign-tx-data 
dh_installemacsen -pdialign-tx-data   
dh_installcatalogs -pdialign-tx-data 
dh_installpam -pdialign-tx-data 
dh_installlogrotate -pdialign-tx-data 
dh_installlogcheck -pdialign-tx-data 
dh_installchangelogs -pdialign-tx-data   
dh_installudev -pdialign-tx-data 
dh_lintian -pdialign-tx-data 
dh_install -pdialign-tx-data  
dh_link -pdialign-tx-data  
dh_installmime -pdialign-tx-data 
dh_strip -pdialign-tx-data  
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dialign-tx 
dh_strip debug symbol extraction: packages to act on: 
dh_strip debug symbol extraction: ignored packages: 
dh_compress -pdialign-tx-data  
dh_fixperms -pdialign-tx-data  
dh_makeshlibs -pdialign-tx-data  
chmod 644 /build/buildd/dialign-t-1.0.0/debian/dialign-tx-data/usr/share/dialign-tx/*
dh_installdeb -pdialign-tx-data 
dh_perl -pdialign-tx-data 
dh_shlibdeps -pdialign-tx-data    
dh_gencontrol -pdialign-tx-data  
dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends}
# symlink identical documentation to depending packages
[ -n "$CDBS_NO_DOC_SYMLINKING" ] || \
	[ -h debian/dialign-tx-data/usr/share/doc ] || \
	[ ! -d debian/dialign-tx-data/usr/share/doc ] || \
	for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/dialign-tx-data/DEBIAN/control`; do \
	    if [ -d debian/$dep/usr/share/doc ]; then \
                echo "Searching for duplicated docs in dependency $dep..."; \
                rootdir=`pwd`; \
                (cd debian/dialign-tx-data/usr/share/doc/dialign-tx-data; find -type f ! -name copyright | while read f; do \
                    thisfile="$rootdir/debian/dialign-tx-data/usr/share/doc/dialign-tx-data/$f"; \
                    depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \
                    if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \
                        echo "  symlinking $f in dialign-tx-data to file in $dep"; \
                        rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \
                    fi; \
                done ); \
            fi; \
	done
# symlink identical Gnome help files within packages
if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/dialign-tx-data/usr/share/gnome/help ]; then \
            cd debian/dialign-tx-data && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \
                set -- $(echo $s | tr ' ' '\n' | sort); \
                f=$1; shift; \
                for d; do \
                    echo "symlinking duplicate Gnome help file $d to $f"; \
                    rm $d; ln -s /$f $d; \
                done; \
            done; \
	fi
dh_link -p dialign-tx-data
dh_md5sums -pdialign-tx-data 
dh_builddeb -pdialign-tx-data 
pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data
pkgstriptranslations: dialign-tx-data does not contain translations, skipping
pkgstriptranslations: no translation files, not creating tarball
pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>"
warning, `debian/dialign-tx-data/DEBIAN/control' contains user-defined field `Original-Maintainer'
dpkg-deb: ignoring 1 warnings about the control file(s)
dpkg-deb: building package `dialign-tx-data' in `../dialign-tx-data_1.0.0-1_all.deb'.
dh_installdirs -pdialign-tx 
dh_installdocs -pdialign-tx   
dh_installexamples -pdialign-tx 
dh_installman -pdialign-tx  
dh_installinfo -pdialign-tx  
dh_installmenu -pdialign-tx 
dh_installcron -pdialign-tx 
dh_installinit -pdialign-tx   
dh_installdebconf -pdialign-tx 
dh_installemacsen -pdialign-tx   
dh_installcatalogs -pdialign-tx 
dh_installpam -pdialign-tx 
dh_installlogrotate -pdialign-tx 
dh_installlogcheck -pdialign-tx 
dh_installchangelogs -pdialign-tx   
dh_installudev -pdialign-tx 
dh_lintian -pdialign-tx 
dh_install -pdialign-tx  
dh_link -pdialign-tx  
dh_installmime -pdialign-tx 
dh_strip -pdialign-tx  
dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dialign-tx 
dh_strip debug symbol extraction: packages to act on: dialign-tx 
dh_strip debug symbol extraction: ignored packages: 
pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data
pkgstriptranslations: dialign-tx-data does not contain translations, skipping
pkgstriptranslations: processing control file: ./debian/dialign-tx-dbgsym/DEBIAN/control, package dialign-tx-dbgsym, directory ./debian/dialign-tx-dbgsym
pkgstriptranslations: dialign-tx-dbgsym does not contain translations, skipping
pkgstriptranslations: no translation files, not creating tarball
pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>"
warning, `/build/buildd/dialign-t-1.0.0/debian/dialign-tx-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer'
dpkg-deb: ignoring 1 warnings about the control file(s)
dpkg-deb: building package `dialign-tx-dbgsym' in `../dialign-tx-dbgsym_1.0.0-1_i386.ddeb'.
dh_compress -pdialign-tx  
dh_fixperms -pdialign-tx  
dh_makeshlibs -pdialign-tx  
dh_installdeb -pdialign-tx 
dh_perl -pdialign-tx 
dh_shlibdeps -pdialign-tx    
dh_gencontrol -pdialign-tx  
dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends}
# symlink identical documentation to depending packages
[ -n "$CDBS_NO_DOC_SYMLINKING" ] || \
	[ -h debian/dialign-tx/usr/share/doc ] || \
	[ ! -d debian/dialign-tx/usr/share/doc ] || \
	for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/dialign-tx/DEBIAN/control`; do \
	    if [ -d debian/$dep/usr/share/doc ]; then \
                echo "Searching for duplicated docs in dependency $dep..."; \
                rootdir=`pwd`; \
                (cd debian/dialign-tx/usr/share/doc/dialign-tx; find -type f ! -name copyright | while read f; do \
                    thisfile="$rootdir/debian/dialign-tx/usr/share/doc/dialign-tx/$f"; \
                    depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \
                    if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \
                        echo "  symlinking $f in dialign-tx to file in $dep"; \
                        rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \
                    fi; \
                done ); \
            fi; \
	done
Searching for duplicated docs in dependency dialign-tx-data...
  symlinking ./changelog.Debian.gz in dialign-tx to file in dialign-tx-data
# symlink identical Gnome help files within packages
if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/dialign-tx/usr/share/gnome/help ]; then \
            cd debian/dialign-tx && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \
                set -- $(echo $s | tr ' ' '\n' | sort); \
                f=$1; shift; \
                for d; do \
                    echo "symlinking duplicate Gnome help file $d to $f"; \
                    rm $d; ln -s /$f $d; \
                done; \
            done; \
	fi
dh_link -p dialign-tx
dh_md5sums -pdialign-tx 
dh_builddeb -pdialign-tx 
pkgstriptranslations: processing control file: ./debian/dialign-tx/DEBIAN/control, package dialign-tx, directory ./debian/dialign-tx
pkgstriptranslations: dialign-tx does not contain translations, skipping
pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data
pkgstriptranslations: dialign-tx-data does not contain translations, skipping
pkgstriptranslations: no translation files, not creating tarball
pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>"
warning, `debian/dialign-tx/DEBIAN/control' contains user-defined field `Original-Maintainer'
dpkg-deb: ignoring 1 warnings about the control file(s)
dpkg-deb: building package `dialign-tx' in `../dialign-tx_1.0.0-1_i386.deb'.
 dpkg-genchanges -b -mUbuntu/i386 Build Daemon <buildd@palmer.buildd> >../dialign-t_1.0.0-1_i386.changes
dpkg-genchanges: binary-only upload - not including any source code
dpkg-buildpackage: binary only upload (no source included)
******************************************************************************
Build finished at 20080515-1234
Publishing debug debs.

chroot-autobuild/build/buildd/dialign-tx-data_1.0.0-1_all.deb:
 new debian package, version 2.0.
 size 1678266 bytes: control archive= 1964 bytes.
     554 bytes,    14 lines      control              
    3693 bytes,    52 lines      md5sums              
 Package: dialign-tx-data
 Source: dialign-t
 Version: 1.0.0-1
 Architecture: all
 Maintainer: Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>
 Original-Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 5516
 Recommends: dialign-t (= 1.0.0-1)
 Section: science
 Priority: optional
 Homepage: http://dialign-tx.gobics.de/
 Description: Common data files for dialign-tx
  This package contain the score matrices and probability distribution files
  that DIALIGN-TX needs to align peptidic and nucleic sequences.

chroot-autobuild/build/buildd/dialign-tx_1.0.0-1_i386.deb:
 new debian package, version 2.0.
 size 52550 bytes: control archive= 1075 bytes.
    1441 bytes,    29 lines      control              
     264 bytes,     4 lines      md5sums              
 Package: dialign-tx
 Source: dialign-t
 Version: 1.0.0-1
 Architecture: i386
 Maintainer: Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>
 Original-Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 152
 Depends: dialign-tx-data (= 1.0.0-1), libc6 (>= 2.4)
 Enhances: t-coffee
 Conflicts: dialign-t, dialign-t-doc
 Replaces: dialign-t, dialign-t-doc
 Provides: dialign-t, dialign-t-doc
 Section: science
 Priority: optional
 Homepage: http://dialign-tx.gobics.de/
 Description: Segment-based multiple sequence alignment
  DIALIGN-TX is a command line tool to perform multiple alignment of protein or
  DNA sequences. It is a complete reimplementation of the segment-base approach
  including several new improvements and heuristics that significantly enhance
  the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
  For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
  favours chains of low-scoring local alignments over isolated high-scoring
  fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
  procedure that is less sensitive to spurious local sequence similarities.
  .
  DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann,
  Burkhard Morgenstern: Improvement of the segment-based approach for multiple
  sequence alignment by combining greedy and progressive alignment strategies.
  Submission in Progress, 2008.

chroot-autobuild/build/buildd/dialign-tx-data_1.0.0-1_all.deb:
drwxr-xr-x root/root         0 2008-05-15 12:34 ./
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/
-rw-r--r-- root/root      1588 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/copyright
-rw-r--r-- root/root       409 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/changelog.Debian.gz
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/dialign-tx/
-rw-r--r-- root/root   1528947 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM.diag_prob_t10
-rw-r--r-- root/root      1409 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM.scr
-rw-r--r-- root/root   1633531 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM75.diag_prob_t2
-rw-r--r-- root/root      1727 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM75.scr
-rw-r--r-- root/root      1752 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM90.scr
-rw-r--r-- root/root     96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_110000
-rw-r--r-- root/root     96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_220000
-rw-r--r-- root/root     96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_330000
-rw-r--r-- root/root     96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_550000
-rw-r--r-- root/root    224263 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_150_exp_110000
-rw-r--r-- root/root    404113 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_200_exp_110000
-rw-r--r-- root/root    636679 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_250_exp_110000
-rw-r--r-- root/root        50 2007-07-07 08:46 ./usr/share/dialign-tx/dna_matrix.scr
-rw-r--r-- root/root       636 2007-08-23 11:49 ./usr/share/dialign-tx/1aboA_ref1.degap.fasta
-rw-r--r-- root/root      1833 2007-08-23 13:02 ./usr/share/dialign-tx/1aboA_ref2.degap.fasta
-rw-r--r-- root/root       695 2007-08-23 11:50 ./usr/share/dialign-tx/1aho_ref1.degap.fasta
-rw-r--r-- root/root      7913 2007-08-23 13:04 ./usr/share/dialign-tx/1ajsA_ref2.degap.fasta
-rw-r--r-- root/root      4569 2007-08-14 19:30 ./usr/share/dialign-tx/1havA_ref2.degap.fasta
-rw-r--r-- root/root      2422 2007-08-14 19:32 ./usr/share/dialign-tx/1idy.degap.fasta
-rw-r--r-- root/root       585 2007-07-15 18:14 ./usr/share/dialign-tx/1idy_ref1.degap.fasta
-rw-r--r-- root/root       585 2007-07-15 18:18 ./usr/share/dialign-tx/1ubi_ref1.degap.fasta
-rw-r--r-- root/root       384 2008-01-18 16:06 ./usr/share/dialign-tx/BB11001.tfa
-rw-r--r-- root/root      3101 2007-12-16 14:55 ./usr/share/dialign-tx/BB11002.msf
-rw-r--r-- root/root       866 2007-12-16 15:01 ./usr/share/dialign-tx/BB11002.tfa
-rw-r--r-- root/root      1952 2008-01-20 18:02 ./usr/share/dialign-tx/BB11003.tfa
-rw-r--r-- root/root      5813 2007-08-23 15:53 ./usr/share/dialign-tx/BB11005.tfa
-rw-r--r-- root/root      1066 2008-01-20 18:23 ./usr/share/dialign-tx/BB11011.tfa
-rw-r--r-- root/root       407 2007-12-16 14:38 ./usr/share/dialign-tx/BB11013.tfa
-rw-r--r-- root/root      7936 2008-01-23 06:55 ./usr/share/dialign-tx/BB11018.tfa
-rw-r--r-- root/root      1284 2008-01-23 07:04 ./usr/share/dialign-tx/BB12039.tfa
-rw-r--r-- root/root      5004 2008-01-23 14:43 ./usr/share/dialign-tx/BB20001.tfa
-rw-r--r-- root/root     12506 2007-12-16 16:28 ./usr/share/dialign-tx/BB20002.tfa
-rw-r--r-- root/root     34849 2007-12-16 14:24 ./usr/share/dialign-tx/BB20003.tfa
-rw-r--r-- root/root     30468 2007-09-02 18:10 ./usr/share/dialign-tx/BB20008.tfa
-rw-r--r-- root/root     39678 2007-08-24 13:52 ./usr/share/dialign-tx/BB30028.tfa
-rw-r--r-- root/root     27187 2007-07-07 08:51 ./usr/share/dialign-tx/kringle_1_ref6.tfa
-rw-r--r-- root/root     12609 2007-12-17 16:52 ./usr/share/dialign-tx/prot-60-4.fasta
-rw-r--r-- root/root      1713 2007-07-07 08:51 ./usr/share/dialign-tx/rand3
-rw-r--r-- root/root      2944 2007-07-07 08:51 ./usr/share/dialign-tx/rand3.muscle.cw
-rw-r--r-- root/root      7057 2007-07-07 08:51 ./usr/share/dialign-tx/rand3.museq
-rw-r--r-- root/root    270326 2007-07-07 08:51 ./usr/share/dialign-tx/scl5
-rw-r--r-- root/root     37428 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h
-rw-r--r-- root/root     61995 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h.aln
-rw-r--r-- root/root       721 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_2
-rw-r--r-- root/root      1481 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_3
-rw-r--r-- root/root        39 2008-01-31 10:30 ./usr/share/dialign-tx/seq_h_3.anc
-rw-r--r-- root/root     18005 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_4
-rw-r--r-- root/root     18206 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_5
-rw-r--r-- root/root        59 2007-07-16 19:52 ./usr/share/dialign-tx/seqt
-rw-r--r-- root/root        64 2007-07-07 08:51 ./usr/share/dialign-tx/tseq

chroot-autobuild/build/buildd/dialign-tx_1.0.0-1_i386.deb:
drwxr-xr-x root/root         0 2008-05-15 12:34 ./
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/doc/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/doc/dialign-tx/
-rw-r--r-- root/root       371 2008-05-15 12:34 ./usr/share/doc/dialign-tx/README.Debian
-rw-r--r-- root/root      1588 2008-05-15 12:34 ./usr/share/doc/dialign-tx/copyright
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/man/
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/share/man/man1/
-rw-r--r-- root/root      2768 2008-05-15 12:34 ./usr/share/man/man1/dialign-tx.1.gz
drwxr-xr-x root/root         0 2008-05-15 12:34 ./usr/bin/
-rwxr-xr-x root/root     96212 2008-05-15 12:34 ./usr/bin/dialign-tx
lrwxrwxrwx root/root         0 2008-05-15 12:34 ./usr/share/doc/dialign-tx/changelog.Debian.gz -> ../dialign-tx-data/changelog.Debian.gz

dialign-t_1.0.0-1_i386.changes:
Format: 1.7
Date: Sat, 03 May 2008 11:16:37 +0900
Source: dialign-t
Binary: dialign-tx dialign-tx-data
Architecture: all i386
Version: 1.0.0-1
Distribution: intrepid
Urgency: low
Maintainer: Ubuntu/i386 Build Daemon <buildd@palmer.buildd>
Changed-By: Charles Plessy <plessy@debian.org>
Description: 
 dialign-tx - Segment-based multiple sequence alignment
 dialign-tx-data - Common data files for dialign-tx
Changes: 
 dialign-t (1.0.0-1) unstable; urgency=low
 .
   [ David Paleino ]
   * Updated to Standards-Version 3.7.3 (no changes needed)
 .
   [ Charles Plessy ]
   * New upstream version, renamed DIALIGN-TX.
   * debian/control: Enhances: t-coffee.
   * debian/copyright:
     - Converted to machine-readable format.
     - Updated relevant copyrights for 2008.
   * Updated my email address.
Files: 
 58182cbf087595b319633281ec5a6e68 1678266 science optional dialign-tx-data_1.0.0-1_all.deb
 10fc2ad374bd202917089bc9fa35dfc8 52550 science optional dialign-tx_1.0.0-1_i386.deb

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  /usr/bin/sudo dpkg --root=/home/buildd/build-608655-1538507/chroot-autobuild --purge intltool-debian groff-base m4 gettext file libhtml-parser-perl intltool automake1.7 cdbs libwww-perl liburi-perl html2text gettext-base debhelper libhtml-tree-perl ifupdown autotools-dev po-debconf net-tools libxml-parser-perl libmagic1 libhtml-tagset-perl libexpat1 netbase bsdmainutils fdupes update-inetd man-db autoconf
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Finished at 20080515-1235
Build needed 00:00:20, 13848k disk space
RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '608655-1538507']
Scanning for processes to kill in build 608655-1538507...
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RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '608655-1538507']
Unmounting chroot for build 608655-1538507...
RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '608655-1538507']
Removing build 608655-1538507