RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '608655-1538507', '/home/buildd/filecache-default/c4a20f9646cd692e75c852484b97b0f2771281a4'] Synching the system clock with the buildd NTP service... 15 May 12:32:17 ntpdate[10198]: adjust time server 10.122.37.1 offset 0.000067 sec Unpacking chroot for build 608655-1538507 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '608655-1538507'] Mounting chroot for build 608655-1538507 RUN: /usr/share/launchpad-buildd/slavebin/apply-ogre-model ['apply-ogre-model', '608655-1538507', 'universe'] Attempting OGRE for universe in build-608655-1538507 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '608655-1538507', 'deb http://ftpmaster.internal/ubuntu intrepid main restricted universe'] Overriding sources.list in build-608655-1538507 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '608655-1538507'] Updating debian chroot for build 608655-1538507 Get:1 http://ftpmaster.internal intrepid Release.gpg [191B] Get:2 http://ftpmaster.internal intrepid Release [65.9kB] Get:3 http://ftpmaster.internal intrepid/main Packages [1195kB] Get:4 http://ftpmaster.internal intrepid/restricted Packages [6986B] Get:5 http://ftpmaster.internal intrepid/universe Packages [4533kB] Fetched 5801kB in 4s (1229kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: cpp-4.3 g++-4.3 gcc-4.3 gcc-4.3-base libgmp3c2 libmpfr1ldbl libstdc++6-4.3-dev The following packages will be upgraded: apt base-files base-passwd bash binutils bsdutils ccache cpp cpp-4.2 debconf debconf-english findutils g++ g++-4.2 gcc gcc-4.2 gcc-4.2-base grep hostname lib64gcc1 libacl1 libattr1 libc6 libc6-amd64 libc6-dev libgcc1 libgomp1 libslang2 libstdc++6 libstdc++6-4.2-dev make makedev mawk mount patch perl perl-base perl-modules python2.5-minimal sed tar util-linux zlib1g Extracting templates from packages: 60% Extracting templates from packages: 100% Preconfiguring packages ... 43 upgraded, 7 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/47.7MB of archives. After this operation, 41.3MB of additional disk space will be used. (Reading database ... 9538 files and directories currently installed.) Preparing to replace mawk 1.3.3-11ubuntu2 (using .../mawk_1.3.3-11.1ubuntu1_i386.deb) ... Unpacking replacement mawk ... Preparing to replace libc6-amd64 2.7-10ubuntu3 (using .../libc6-amd64_2.8~20080505-0ubuntu3_i386.deb) ... Unpacking replacement libc6-amd64 ... Preparing to replace libc6-dev 2.7-10ubuntu3 (using .../libc6-dev_2.8~20080505-0ubuntu3_i386.deb) ... Unpacking replacement libc6-dev ... Selecting previously deselected package gcc-4.3-base. Unpacking gcc-4.3-base (from .../gcc-4.3-base_4.3.0-4ubuntu1_i386.deb) ... Setting up gcc-4.3-base (4.3.0-4ubuntu1) ... (Reading database ... 9552 files and directories currently installed.) Preparing to replace libgcc1 1:4.2.3-2ubuntu7 (using .../libgcc1_1%3a4.3.0-4ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.3.0-4ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9552 files and directories currently installed.) 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(Reading database ... 9779 files and directories currently installed.) Preparing to replace debconf 1.5.20 (using .../debconf_1.5.21_all.deb) ... Unpacking replacement debconf ... Setting up debconf (1.5.21) ... (Reading database ... 9779 files and directories currently installed.) Preparing to replace libstdc++6 4.2.3-2ubuntu7 (using .../libstdc++6_4.3.0-4ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.3.0-4ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9779 files and directories currently installed.) Preparing to replace apt 0.7.9ubuntu17 (using .../apt_0.7.14ubuntu2_i386.deb) ... Unpacking replacement apt ... Setting up apt (0.7.14ubuntu2) ... Installing new version of config file /etc/apt/apt.conf.d/01ubuntu ... Installing new version of config file /etc/cron.daily/apt ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9779 files and directories currently installed.) Preparing to replace libattr1 1:2.4.39-1 (using .../libattr1_1%3a2.4.41-1_i386.deb) ... Unpacking replacement libattr1 ... Setting up libattr1 (1:2.4.41-1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9778 files and directories currently installed.) Preparing to replace libacl1 2.2.45-1 (using .../libacl1_2.2.47-2_i386.deb) ... Unpacking replacement libacl1 ... Setting up libacl1 (2.2.47-2) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9777 files and directories currently installed.) Preparing to replace libslang2 2.1.3-2 (using .../libslang2_2.1.3-3_i386.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.1.3-3) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9777 files and directories currently installed.) Preparing to replace zlib1g 1:1.2.3.3.dfsg-7ubuntu1 (using .../zlib1g_1%3a1.2.3.3.dfsg-12ubuntu1_i386.deb) ... Unpacking replacement zlib1g ... Setting up zlib1g (1:1.2.3.3.dfsg-12ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place (Reading database ... 9777 files and directories currently installed.) Preparing to replace python2.5-minimal 2.5.2-2ubuntu4 (using .../python2.5-minimal_2.5.2-4ubuntu1_i386.deb) ... Unpacking replacement python2.5-minimal ... Setting up python2.5-minimal (2.5.2-4ubuntu1) ... (Reading database ... 9777 files and directories currently installed.) Preparing to replace makedev 2.3.1-84ubuntu1 (using .../makedev_2.3.1-88_all.deb) ... Removing obsolete conffile /etc/init.d/makedev ... Removing any system startup links for /etc/init.d/makedev ... /etc/rc1.d/K20makedev /etc/rc2.d/S20makedev /etc/rc3.d/S20makedev /etc/rc4.d/S20makedev /etc/rc5.d/S20makedev Unpacking replacement makedev ... Selecting previously deselected package libgmp3c2. Unpacking libgmp3c2 (from .../libgmp3c2_2%3a4.2.2+dfsg-1ubuntu2_i386.deb) ... Selecting previously deselected package libmpfr1ldbl. Unpacking libmpfr1ldbl (from .../libmpfr1ldbl_2.3.1.dfsg.1-2ubuntu1_i386.deb) ... Selecting previously deselected package cpp-4.3. Unpacking cpp-4.3 (from .../cpp-4.3_4.3.0-4ubuntu1_i386.deb) ... Preparing to replace cpp 4:4.2.3-1ubuntu3 (using .../cpp_4%3a4.3.0-5ubuntu2_i386.deb) ... Unpacking replacement cpp ... Preparing to replace binutils 2.18.1~cvs20080103-0ubuntu1 (using .../binutils_2.18.50.20080509-0ubuntu1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace ccache 2.4-11 (using .../ccache_2.4-15_i386.deb) ... Unpacking replacement ccache ... Preparing to replace lib64gcc1 1:4.2.3-2ubuntu7 (using .../lib64gcc1_1%3a4.3.0-4ubuntu1_i386.deb) ... Unpacking replacement lib64gcc1 ... Preparing to replace libgomp1 4.2.3-2ubuntu7 (using .../libgomp1_4.3.0-4ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace g++-4.2 4.2.3-2ubuntu7 (using .../g++-4.2_4.2.3-4ubuntu1_i386.deb) ... Unpacking replacement g++-4.2 ... Preparing to replace libstdc++6-4.2-dev 4.2.3-2ubuntu7 (using .../libstdc++6-4.2-dev_4.2.3-4ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.2-dev ... Preparing to replace gcc-4.2 4.2.3-2ubuntu7 (using .../gcc-4.2_4.2.3-4ubuntu1_i386.deb) ... Unpacking replacement gcc-4.2 ... Preparing to replace cpp-4.2 4.2.3-2ubuntu7 (using .../cpp-4.2_4.2.3-4ubuntu1_i386.deb) ... Unpacking replacement cpp-4.2 ... Preparing to replace gcc-4.2-base 4.2.3-2ubuntu7 (using .../gcc-4.2-base_4.2.3-4ubuntu1_i386.deb) ... Unpacking replacement gcc-4.2-base ... Selecting previously deselected package gcc-4.3. Unpacking gcc-4.3 (from .../gcc-4.3_4.3.0-4ubuntu1_i386.deb) ... Selecting previously deselected package libstdc++6-4.3-dev. Unpacking libstdc++6-4.3-dev (from .../libstdc++6-4.3-dev_4.3.0-4ubuntu1_i386.deb) ... Selecting previously deselected package g++-4.3. Unpacking g++-4.3 (from .../g++-4.3_4.3.0-4ubuntu1_i386.deb) ... Preparing to replace gcc 4:4.2.3-1ubuntu3 (using .../gcc_4%3a4.3.0-5ubuntu2_i386.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.2.3-1ubuntu3 (using .../g++_4%3a4.3.0-5ubuntu2_i386.deb) ... Unpacking replacement g++ ... Preparing to replace make 3.81-3build1 (using .../archives/make_3.81-4_i386.deb) ... Unpacking replacement make ... Preparing to replace patch 2.5.9-4 (using .../patch_2.5.9-5_i386.deb) ... Unpacking replacement patch ... Setting up libc6-amd64 (2.8~20080505-0ubuntu3) ... Setting up libc6-dev (2.8~20080505-0ubuntu3) ... Setting up makedev (2.3.1-88) ... Setting up libgmp3c2 (2:4.2.2+dfsg-1ubuntu2) ... Setting up libmpfr1ldbl (2.3.1.dfsg.1-2ubuntu1) ... Setting up cpp-4.3 (4.3.0-4ubuntu1) ... Setting up cpp (4:4.3.0-5ubuntu2) ... Setting up binutils (2.18.50.20080509-0ubuntu1) ... Setting up ccache (2.4-15) ... Setting up lib64gcc1 (1:4.3.0-4ubuntu1) ... Setting up libgomp1 (4.3.0-4ubuntu1) ... Setting up gcc-4.2-base (4.2.3-4ubuntu1) ... Setting up cpp-4.2 (4.2.3-4ubuntu1) ... Setting up gcc-4.2 (4.2.3-4ubuntu1) ... Setting up gcc-4.3 (4.3.0-4ubuntu1) ... Setting up gcc (4:4.3.0-5ubuntu2) ... Setting up make (3.81-4) ... Setting up patch (2.5.9-5) ... Setting up libstdc++6-4.3-dev (4.3.0-4ubuntu1) ... Setting up perl-modules (5.10.0-10) ... Setting up g++-4.2 (4.2.3-4ubuntu1) ... Setting up g++-4.3 (4.3.0-4ubuntu1) ... Setting up g++ (4:4.3.0-5ubuntu2) ... Setting up perl (5.10.0-10) ... Setting up libstdc++6-4.2-dev (4.2.3-4ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '608655-1538507', '--nolog', '--batch', '--archive=ubuntu', '-A', '--purpose=PRIMARY', '--dist=intrepid', '--comp=universe', 'dialign-t_1.0.0-1.dsc'] Initiating build Automatic build of dialign-t_1.0.0-1 on palmer by sbuild/i386 1.170.5 Build started at 20080515-1233 ****************************************************************************** dialign-t_1.0.0-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 5), cdbs Checking for already installed source dependencies... debhelper: missing cdbs: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper cdbs Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-4.2 lib64gcc1 libc6-amd64 libstdc++6-4.2-dev Use 'apt-get autoremove' to remove them. The following extra packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf update-inetd Suggested packages: autobook autoconf-archive autoconf-doc autoconf2.13 gnu-standards libtool vacation wamerican wordlist whois devscripts doc-base dh-make cvs gettext-doc groff iproute dhcp3-client dhcp-client ppp libio-socket-ssl-perl less www-browser Recommended packages: automake automaken curl wget lynx libcompress-zlib-perl libhtml-format-perl libmailtools-perl libmail-box-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake1.7 autotools-dev bsdmainutils cdbs debhelper fdupes file gettext gettext-base groff-base html2text ifupdown intltool intltool-debian libexpat1 libhtml-parser-perl libhtml-tagset-perl libhtml-tree-perl libmagic1 liburi-perl libwww-perl libxml-parser-perl m4 man-db net-tools netbase po-debconf update-inetd dpkg-preconfigure: unable to re-open stdin: 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 0B/8919kB of archives. After this operation, 29.6MB of additional disk space will be used. Selecting previously deselected package gettext-base. (Reading database ... 10571 files and directories currently installed.) Unpacking gettext-base (from .../gettext-base_0.17-2ubuntu1_i386.deb) ... Selecting previously deselected package net-tools. Unpacking net-tools (from .../net-tools_1.60-19ubuntu1_i386.deb) ... Selecting previously deselected package ifupdown. Unpacking ifupdown (from .../ifupdown_0.6.8ubuntu8_i386.deb) ... Selecting previously deselected package update-inetd. Unpacking update-inetd (from .../update-inetd_4.30_all.deb) ... Selecting previously deselected package netbase. Unpacking netbase (from .../netbase_4.30ubuntu1_all.deb) ... Selecting previously deselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_6.1.10ubuntu2_i386.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_4.24-2_i386.deb) ... Selecting previously deselected package file. Unpacking file (from .../archives/file_4.24-2_i386.deb) ... Selecting previously deselected package groff-base. Unpacking groff-base (from .../groff-base_1.18.1.1-20_i386.deb) ... Selecting previously deselected package libexpat1. Unpacking libexpat1 (from .../libexpat1_2.0.1-0ubuntu1_i386.deb) ... Selecting previously deselected package libhtml-tagset-perl. Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ... Selecting previously deselected package liburi-perl. Unpacking liburi-perl (from .../liburi-perl_1.35.dfsg.1-1_all.deb) ... Selecting previously deselected package libhtml-parser-perl. Unpacking libhtml-parser-perl (from .../libhtml-parser-perl_3.56-1build1_i386.deb) ... Selecting previously deselected package libhtml-tree-perl. Unpacking libhtml-tree-perl (from .../libhtml-tree-perl_3.23-1_all.deb) ... Selecting previously deselected package libwww-perl. Unpacking libwww-perl (from .../libwww-perl_5.812-1_all.deb) ... Selecting previously deselected package libxml-parser-perl. Unpacking libxml-parser-perl (from .../libxml-parser-perl_2.36-1.1build1_i386.deb) ... Selecting previously deselected package man-db. Unpacking man-db (from .../man-db_2.5.2-1_i386.deb) ... Selecting previously deselected package m4. Unpacking m4 (from .../archives/m4_1.4.11-1_i386.deb) ... Selecting previously deselected package autoconf. Unpacking autoconf (from .../autoconf_2.61-7_all.deb) ... Selecting previously deselected package autotools-dev. Unpacking autotools-dev (from .../autotools-dev_20080123.1_all.deb) ... Selecting previously deselected package automake1.7. Unpacking automake1.7 (from .../automake1.7_1.7.9-9_all.deb) ... Selecting previously deselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-3build2_i386.deb) ... Selecting previously deselected package gettext. Unpacking gettext (from .../gettext_0.17-2ubuntu1_i386.deb) ... Selecting previously deselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously deselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.12.1_all.deb) ... Selecting previously deselected package debhelper. Unpacking debhelper (from .../debhelper_7.0.8ubuntu1_all.deb) ... Selecting previously deselected package fdupes. Unpacking fdupes (from .../fdupes_1.50-PR2-1_i386.deb) ... Selecting previously deselected package intltool. Unpacking intltool (from .../intltool_0.37.1-1ubuntu1_all.deb) ... Selecting previously deselected package cdbs. Unpacking cdbs (from .../cdbs_0.4.52ubuntu1_all.deb) ... Setting up gettext-base (0.17-2ubuntu1) ... Setting up net-tools (1.60-19ubuntu1) ... Setting up ifupdown (0.6.8ubuntu8) ... ifupdown.postinst: Warning: No 'iface lo' definition found in /etc/network/interfaces ifupdown.postinst: Warning: No 'auto lo' statement found in /etc/network/interfaces Setting up update-inetd (4.30) ... Setting up netbase (4.30ubuntu1) ... Setting up bsdmainutils (6.1.10ubuntu2) ... Setting up libmagic1 (4.24-2) ... Setting up file (4.24-2) ... Setting up groff-base (1.18.1.1-20) ... Setting up libexpat1 (2.0.1-0ubuntu1) ... Setting up libhtml-tagset-perl (3.20-2) ... Setting up liburi-perl (1.35.dfsg.1-1) ... Setting up libhtml-parser-perl (3.56-1build1) ... Setting up libhtml-tree-perl (3.23-1) ... Setting up libwww-perl (5.812-1) ... Setting up libxml-parser-perl (2.36-1.1build1) ... Setting up man-db (2.5.2-1) ... Building database of manual pages ... Setting up m4 (1.4.11-1) ... Setting up autoconf (2.61-7) ... Setting up autotools-dev (20080123.1) ... Setting up automake1.7 (1.7.9-9) ... Setting up html2text (1.3.2a-3build2) ... Setting up gettext (0.17-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.12.1) ... Setting up debhelper (7.0.8ubuntu1) ... Setting up fdupes (1.50-PR2-1) ... Setting up intltool (0.37.1-1ubuntu1) ... Setting up cdbs (0.4.52ubuntu1) ... Processing triggers for libc6 ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.8~20080505-0ubuntu3 make_3.81-4 dpkg-dev_1.14.16.6ubuntu3 gcc-4.3_4.3.0-4ubuntu1 g++-4.3_4.3.0-4ubuntu1 binutils_2.18.50.20080509-0ubuntu1 libstdc++6_4.3.0-4ubuntu1 libstdc++6-4.3-dev_4.3.0-4ubuntu1 ------------------------------------------------------------------------------ sh: gcc: not found dpkg-source: warning: Couldn't determine gcc system type, falling back to default (native compilation) gpg: Signature made Wed May 7 06:16:07 2008 BST using DSA key ID BAFEC7F2 gpg: Can't check signature: public key not found dpkg-source: extracting dialign-t in dialign-t-1.0.0 dpkg-source: unpacking dialign-t_1.0.0.orig.tar.gz dpkg-source: applying /home/buildd/build-608655-1538507/dialign-t_1.0.0-1.diff.gz dpkg-buildpackage: set CPPFLAGS to default value: dpkg-buildpackage: set CFLAGS to default value: -g -O2 dpkg-buildpackage: set CXXFLAGS to default value: -g -O2 dpkg-buildpackage: set FFLAGS to default value: -g -O2 dpkg-buildpackage: set LDFLAGS to default value: -Wl,-Bsymbolic-functions dpkg-buildpackage: source package dialign-t dpkg-buildpackage: source version 1.0.0-1 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean test -x debian/rules dh_testroot dh_clean /usr/bin/make -C /build/buildd/dialign-t-1.0.0/source CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" -k clean make[1]: Entering directory `/build/buildd/dialign-t-1.0.0/source' rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack museq dialign-tx make[1]: Leaving directory `/build/buildd/dialign-t-1.0.0/source' rm -f debian/stamp-makefile-build debian/rules build test -x debian/rules mkdir -p "/build/buildd/dialign-t-1.0.0/source" /usr/bin/make -C /build/buildd/dialign-t-1.0.0/source CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="-Wl,-Bsymbolic-functions" make[1]: Entering directory `/build/buildd/dialign-t-1.0.0/source' gcc -g -O2 -g -Wall -O2 -c -o museq.o museq.c museq.c: In function 'main': museq.c:273: warning: implicit declaration of function 'free_alignment' museq.c:94: warning: 'pdist' may be used uninitialized in this function museq.c:93: warning: 'in_seq_col' may be used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o parameters.o parameters.c gcc -g -O2 -g -Wall -O2 -c -o io.o io.c io.c: In function 'read_anchors': io.c:529: warning: format '%li' expects type 'long int *', but argument 3 has type 'int *' io.c:529: warning: format '%li' expects type 'long int *', but argument 4 has type 'int *' io.c:529: warning: format '%li' expects type 'long int *', but argument 5 has type 'int *' io.c:529: warning: format '%li' expects type 'long int *', but argument 6 has type 'int *' io.c:529: warning: format '%li' expects type 'long int *', but argument 7 has type 'int *' io.c: In function 'read_fasta': io.c:411: warning: 'data_maxlen' may be used uninitialized in this function io.c:410: warning: 'slen' may be used uninitialized in this function io.c:409: warning: 'data' may be used uninitialized in this function io.c:396: warning: 'seq' may be used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o diag.o diag.c diag.c: In function 'find_diags_guided': diag.c:739: warning: statement with no effect diag.c:535: warning: unused variable 'mstatus' diag.c:518: warning: unused variable 'score1' diag.c:517: warning: unused variable 'cons_maxd' diag.c:513: warning: unused variable 'hasAli' diag.c: In function 'find_diags_dyn': diag.c:1329: warning: 'ap' may be used uninitialized in this function diag.c: In function 'find_diags_dialign': diag.c:1005: warning: 'ap' may be used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o alig.o alig.c alig.c: In function 'free_alignment': alig.c:145: warning: unused variable 'tpos' alig.c:144: warning: unused variable 'o_apos' alig.c: In function 'align_diag': alig.c:594: warning: unused variable 'ttim' alig.c:593: warning: unused variable 'dgc_next' alig.c:593: warning: unused variable 'dgc' alig.c:585: warning: unused variable 'score1' alig.c:584: warning: unused variable 'a2' alig.c:584: warning: unused variable 'a1' alig.c:583: warning: unused variable 'smatrixlen' alig.c:582: warning: unused variable 'data2' alig.c:581: warning: unused variable 'data1' alig.c:580: warning: unused variable 'sdata' alig.c:579: warning: unused variable 'c2n' alig.c: In function 'prepare_alignment': alig.c:981: warning: 'max' may be used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o assemble.o assemble.c assemble.c: In function 'fit_fpos_diag': assemble.c:106: warning: unused variable 'ep1' assemble.c: In function 'guided_aligner_rec': assemble.c:911: warning: unused variable 'survive' assemble.c:865: warning: unused variable 'changed' assemble.c:853: warning: unused variable 'l2' assemble.c:853: warning: unused variable 'l1' assemble.c:853: warning: unused variable 'l' assemble.c: In function 'guided_aligner': assemble.c:1321: warning: unused variable 'tdg' assemble.c:1321: warning: unused variable 'dg' assemble.c: In function 'confl_diag': assemble.c:606: warning: 'sF2' may be used uninitialized in this function assemble.c: In function 'adapt_diag': assemble.c:187: warning: 'succF' may be used uninitialized in this function assemble.c:187: warning: 'predF' may be used uninitialized in this function assemble.c: In function 'simple_aligner': assemble.c:423: warning: 'tclock' may be used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o prob.o prob.c prob.c: In function 'calc_score_dist': prob.c:157: warning: 'sq1' is used uninitialized in this function prob.c:158: warning: 'sq2' is used uninitialized in this function gcc -g -O2 -g -Wall -O2 -c -o orf.o orf.c gcc -g -O2 -g -Wall -O2 -c -o translate.o translate.c translate.c: In function 'retranslate': translate.c:599: warning: control reaches end of non-void function translate.c: In function 'inverse': translate.c:464: warning: control reaches end of non-void function translate.c: In function 'translate': translate.c:453: warning: control reaches end of non-void function rm -f ./museq gcc -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm mv museq dialign-tx make[1]: Leaving directory `/build/buildd/dialign-t-1.0.0/source' touch debian/stamp-makefile-build DEB_MAKE_CHECK_TARGET unset, not running checks /usr/bin/fakeroot debian/rules binary test -x debian/rules dh_testroot dh_clean -k dh_installdirs -A mkdir -p "/build/buildd/dialign-t-1.0.0/source" DEB_MAKE_CHECK_TARGET unset, not running checks DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target dh_installdirs -pdialign-tx-data dh_installdocs -pdialign-tx-data dh_installexamples -pdialign-tx-data dh_installman -pdialign-tx-data dh_installinfo -pdialign-tx-data dh_installmenu -pdialign-tx-data dh_installcron -pdialign-tx-data dh_installinit -pdialign-tx-data dh_installdebconf -pdialign-tx-data dh_installemacsen -pdialign-tx-data dh_installcatalogs -pdialign-tx-data dh_installpam -pdialign-tx-data dh_installlogrotate -pdialign-tx-data dh_installlogcheck -pdialign-tx-data dh_installchangelogs -pdialign-tx-data dh_installudev -pdialign-tx-data dh_lintian -pdialign-tx-data dh_install -pdialign-tx-data dh_link -pdialign-tx-data dh_installmime -pdialign-tx-data dh_strip -pdialign-tx-data dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dialign-tx dh_strip debug symbol extraction: packages to act on: dh_strip debug symbol extraction: ignored packages: dh_compress -pdialign-tx-data dh_fixperms -pdialign-tx-data dh_makeshlibs -pdialign-tx-data chmod 644 /build/buildd/dialign-t-1.0.0/debian/dialign-tx-data/usr/share/dialign-tx/* dh_installdeb -pdialign-tx-data dh_perl -pdialign-tx-data dh_shlibdeps -pdialign-tx-data dh_gencontrol -pdialign-tx-data dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends} # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/dialign-tx-data/usr/share/doc ] || \ [ ! -d debian/dialign-tx-data/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/dialign-tx-data/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/dialign-tx-data/usr/share/doc/dialign-tx-data; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/dialign-tx-data/usr/share/doc/dialign-tx-data/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in dialign-tx-data to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/dialign-tx-data/usr/share/gnome/help ]; then \ cd debian/dialign-tx-data && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p dialign-tx-data dh_md5sums -pdialign-tx-data dh_builddeb -pdialign-tx-data pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data pkgstriptranslations: dialign-tx-data does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>" warning, `debian/dialign-tx-data/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `dialign-tx-data' in `../dialign-tx-data_1.0.0-1_all.deb'. dh_installdirs -pdialign-tx dh_installdocs -pdialign-tx dh_installexamples -pdialign-tx dh_installman -pdialign-tx dh_installinfo -pdialign-tx dh_installmenu -pdialign-tx dh_installcron -pdialign-tx dh_installinit -pdialign-tx dh_installdebconf -pdialign-tx dh_installemacsen -pdialign-tx dh_installcatalogs -pdialign-tx dh_installpam -pdialign-tx dh_installlogrotate -pdialign-tx dh_installlogcheck -pdialign-tx dh_installchangelogs -pdialign-tx dh_installudev -pdialign-tx dh_lintian -pdialign-tx dh_install -pdialign-tx dh_link -pdialign-tx dh_installmime -pdialign-tx dh_strip -pdialign-tx dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: dialign-tx dh_strip debug symbol extraction: packages to act on: dialign-tx dh_strip debug symbol extraction: ignored packages: pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data pkgstriptranslations: dialign-tx-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/dialign-tx-dbgsym/DEBIAN/control, package dialign-tx-dbgsym, directory ./debian/dialign-tx-dbgsym pkgstriptranslations: dialign-tx-dbgsym does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>" warning, `/build/buildd/dialign-t-1.0.0/debian/dialign-tx-dbgsym/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `dialign-tx-dbgsym' in `../dialign-tx-dbgsym_1.0.0-1_i386.ddeb'. dh_compress -pdialign-tx dh_fixperms -pdialign-tx dh_makeshlibs -pdialign-tx dh_installdeb -pdialign-tx dh_perl -pdialign-tx dh_shlibdeps -pdialign-tx dh_gencontrol -pdialign-tx dpkg-gencontrol: warning: unknown substitution variable ${misc:Depends} # symlink identical documentation to depending packages [ -n "$CDBS_NO_DOC_SYMLINKING" ] || \ [ -h debian/dialign-tx/usr/share/doc ] || \ [ ! -d debian/dialign-tx/usr/share/doc ] || \ for dep in `perl -ne 'if (/^(Pre-)?Depends:/) {s/^\w+://; foreach (split /,/) { split; print($_[0], "\n"); } }' debian/dialign-tx/DEBIAN/control`; do \ if [ -d debian/$dep/usr/share/doc ]; then \ echo "Searching for duplicated docs in dependency $dep..."; \ rootdir=`pwd`; \ (cd debian/dialign-tx/usr/share/doc/dialign-tx; find -type f ! -name copyright | while read f; do \ thisfile="$rootdir/debian/dialign-tx/usr/share/doc/dialign-tx/$f"; \ depfile="$rootdir/debian/$dep/usr/share/doc/$dep/$f"; \ if [ -f $depfile -o -L $depfile ] && zcmp $thisfile $depfile >/dev/null; then \ echo " symlinking $f in dialign-tx to file in $dep"; \ rm $thisfile; ln -s /usr/share/doc/$dep/$f $thisfile; \ fi; \ done ); \ fi; \ done Searching for duplicated docs in dependency dialign-tx-data... symlinking ./changelog.Debian.gz in dialign-tx to file in dialign-tx-data # symlink identical Gnome help files within packages if [ -z "$CDBS_NO_GNOME_HELP_SYMLINKING" ] && [ -d debian/dialign-tx/usr/share/gnome/help ]; then \ cd debian/dialign-tx && LC_ALL=C fdupes -r1nq usr/share/gnome/help | while read s; do \ set -- $(echo $s | tr ' ' '\n' | sort); \ f=$1; shift; \ for d; do \ echo "symlinking duplicate Gnome help file $d to $f"; \ rm $d; ln -s /$f $d; \ done; \ done; \ fi dh_link -p dialign-tx dh_md5sums -pdialign-tx dh_builddeb -pdialign-tx pkgstriptranslations: processing control file: ./debian/dialign-tx/DEBIAN/control, package dialign-tx, directory ./debian/dialign-tx pkgstriptranslations: dialign-tx does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/dialign-tx-data/DEBIAN/control, package dialign-tx-data, directory ./debian/dialign-tx-data pkgstriptranslations: dialign-tx-data does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com>" warning, `debian/dialign-tx/DEBIAN/control' contains user-defined field `Original-Maintainer' dpkg-deb: ignoring 1 warnings about the control file(s) dpkg-deb: building package `dialign-tx' in `../dialign-tx_1.0.0-1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon <buildd@palmer.buildd> >../dialign-t_1.0.0-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20080515-1234 Publishing debug debs. chroot-autobuild/build/buildd/dialign-tx-data_1.0.0-1_all.deb: new debian package, version 2.0. size 1678266 bytes: control archive= 1964 bytes. 554 bytes, 14 lines control 3693 bytes, 52 lines md5sums Package: dialign-tx-data Source: dialign-t Version: 1.0.0-1 Architecture: all Maintainer: Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com> Original-Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Installed-Size: 5516 Recommends: dialign-t (= 1.0.0-1) Section: science Priority: optional Homepage: http://dialign-tx.gobics.de/ Description: Common data files for dialign-tx This package contain the score matrices and probability distribution files that DIALIGN-TX needs to align peptidic and nucleic sequences. chroot-autobuild/build/buildd/dialign-tx_1.0.0-1_i386.deb: new debian package, version 2.0. size 52550 bytes: control archive= 1075 bytes. 1441 bytes, 29 lines control 264 bytes, 4 lines md5sums Package: dialign-tx Source: dialign-t Version: 1.0.0-1 Architecture: i386 Maintainer: Ubuntu MOTU Developers <ubuntu-motu@lists.ubuntu.com> Original-Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Installed-Size: 152 Depends: dialign-tx-data (= 1.0.0-1), libc6 (>= 2.4) Enhances: t-coffee Conflicts: dialign-t, dialign-t-doc Replaces: dialign-t, dialign-t-doc Provides: dialign-t, dialign-t-doc Section: science Priority: optional Homepage: http://dialign-tx.gobics.de/ Description: Segment-based multiple sequence alignment DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities. . DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies. Submission in Progress, 2008. chroot-autobuild/build/buildd/dialign-tx-data_1.0.0-1_all.deb: drwxr-xr-x root/root 0 2008-05-15 12:34 ./ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/ -rw-r--r-- root/root 1588 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/copyright -rw-r--r-- root/root 409 2008-05-15 12:34 ./usr/share/doc/dialign-tx-data/changelog.Debian.gz drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/dialign-tx/ -rw-r--r-- root/root 1528947 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM.diag_prob_t10 -rw-r--r-- root/root 1409 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM.scr -rw-r--r-- root/root 1633531 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM75.diag_prob_t2 -rw-r--r-- root/root 1727 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM75.scr -rw-r--r-- root/root 1752 2007-07-07 08:46 ./usr/share/dialign-tx/BLOSUM90.scr -rw-r--r-- root/root 96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_110000 -rw-r--r-- root/root 96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_220000 -rw-r--r-- root/root 96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_330000 -rw-r--r-- root/root 96938 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_100_exp_550000 -rw-r--r-- root/root 224263 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_150_exp_110000 -rw-r--r-- root/root 404113 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_200_exp_110000 -rw-r--r-- root/root 636679 2007-07-07 08:46 ./usr/share/dialign-tx/dna_diag_prob_250_exp_110000 -rw-r--r-- root/root 50 2007-07-07 08:46 ./usr/share/dialign-tx/dna_matrix.scr -rw-r--r-- root/root 636 2007-08-23 11:49 ./usr/share/dialign-tx/1aboA_ref1.degap.fasta -rw-r--r-- root/root 1833 2007-08-23 13:02 ./usr/share/dialign-tx/1aboA_ref2.degap.fasta -rw-r--r-- root/root 695 2007-08-23 11:50 ./usr/share/dialign-tx/1aho_ref1.degap.fasta -rw-r--r-- root/root 7913 2007-08-23 13:04 ./usr/share/dialign-tx/1ajsA_ref2.degap.fasta -rw-r--r-- root/root 4569 2007-08-14 19:30 ./usr/share/dialign-tx/1havA_ref2.degap.fasta -rw-r--r-- root/root 2422 2007-08-14 19:32 ./usr/share/dialign-tx/1idy.degap.fasta -rw-r--r-- root/root 585 2007-07-15 18:14 ./usr/share/dialign-tx/1idy_ref1.degap.fasta -rw-r--r-- root/root 585 2007-07-15 18:18 ./usr/share/dialign-tx/1ubi_ref1.degap.fasta -rw-r--r-- root/root 384 2008-01-18 16:06 ./usr/share/dialign-tx/BB11001.tfa -rw-r--r-- root/root 3101 2007-12-16 14:55 ./usr/share/dialign-tx/BB11002.msf -rw-r--r-- root/root 866 2007-12-16 15:01 ./usr/share/dialign-tx/BB11002.tfa -rw-r--r-- root/root 1952 2008-01-20 18:02 ./usr/share/dialign-tx/BB11003.tfa -rw-r--r-- root/root 5813 2007-08-23 15:53 ./usr/share/dialign-tx/BB11005.tfa -rw-r--r-- root/root 1066 2008-01-20 18:23 ./usr/share/dialign-tx/BB11011.tfa -rw-r--r-- root/root 407 2007-12-16 14:38 ./usr/share/dialign-tx/BB11013.tfa -rw-r--r-- root/root 7936 2008-01-23 06:55 ./usr/share/dialign-tx/BB11018.tfa -rw-r--r-- root/root 1284 2008-01-23 07:04 ./usr/share/dialign-tx/BB12039.tfa -rw-r--r-- root/root 5004 2008-01-23 14:43 ./usr/share/dialign-tx/BB20001.tfa -rw-r--r-- root/root 12506 2007-12-16 16:28 ./usr/share/dialign-tx/BB20002.tfa -rw-r--r-- root/root 34849 2007-12-16 14:24 ./usr/share/dialign-tx/BB20003.tfa -rw-r--r-- root/root 30468 2007-09-02 18:10 ./usr/share/dialign-tx/BB20008.tfa -rw-r--r-- root/root 39678 2007-08-24 13:52 ./usr/share/dialign-tx/BB30028.tfa -rw-r--r-- root/root 27187 2007-07-07 08:51 ./usr/share/dialign-tx/kringle_1_ref6.tfa -rw-r--r-- root/root 12609 2007-12-17 16:52 ./usr/share/dialign-tx/prot-60-4.fasta -rw-r--r-- root/root 1713 2007-07-07 08:51 ./usr/share/dialign-tx/rand3 -rw-r--r-- root/root 2944 2007-07-07 08:51 ./usr/share/dialign-tx/rand3.muscle.cw -rw-r--r-- root/root 7057 2007-07-07 08:51 ./usr/share/dialign-tx/rand3.museq -rw-r--r-- root/root 270326 2007-07-07 08:51 ./usr/share/dialign-tx/scl5 -rw-r--r-- root/root 37428 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h -rw-r--r-- root/root 61995 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h.aln -rw-r--r-- root/root 721 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_2 -rw-r--r-- root/root 1481 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_3 -rw-r--r-- root/root 39 2008-01-31 10:30 ./usr/share/dialign-tx/seq_h_3.anc -rw-r--r-- root/root 18005 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_4 -rw-r--r-- root/root 18206 2007-07-07 08:51 ./usr/share/dialign-tx/seq_h_5 -rw-r--r-- root/root 59 2007-07-16 19:52 ./usr/share/dialign-tx/seqt -rw-r--r-- root/root 64 2007-07-07 08:51 ./usr/share/dialign-tx/tseq chroot-autobuild/build/buildd/dialign-tx_1.0.0-1_i386.deb: drwxr-xr-x root/root 0 2008-05-15 12:34 ./ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/doc/dialign-tx/ -rw-r--r-- root/root 371 2008-05-15 12:34 ./usr/share/doc/dialign-tx/README.Debian -rw-r--r-- root/root 1588 2008-05-15 12:34 ./usr/share/doc/dialign-tx/copyright drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/man/ drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/share/man/man1/ -rw-r--r-- root/root 2768 2008-05-15 12:34 ./usr/share/man/man1/dialign-tx.1.gz drwxr-xr-x root/root 0 2008-05-15 12:34 ./usr/bin/ -rwxr-xr-x root/root 96212 2008-05-15 12:34 ./usr/bin/dialign-tx lrwxrwxrwx root/root 0 2008-05-15 12:34 ./usr/share/doc/dialign-tx/changelog.Debian.gz -> ../dialign-tx-data/changelog.Debian.gz dialign-t_1.0.0-1_i386.changes: Format: 1.7 Date: Sat, 03 May 2008 11:16:37 +0900 Source: dialign-t Binary: dialign-tx dialign-tx-data Architecture: all i386 Version: 1.0.0-1 Distribution: intrepid Urgency: low Maintainer: Ubuntu/i386 Build Daemon <buildd@palmer.buildd> Changed-By: Charles Plessy <plessy@debian.org> Description: dialign-tx - Segment-based multiple sequence alignment dialign-tx-data - Common data files for dialign-tx Changes: dialign-t (1.0.0-1) unstable; urgency=low . [ David Paleino ] * Updated to Standards-Version 3.7.3 (no changes needed) . [ Charles Plessy ] * New upstream version, renamed DIALIGN-TX. * debian/control: Enhances: t-coffee. * debian/copyright: - Converted to machine-readable format. - Updated relevant copyrights for 2008. * Updated my email address. Files: 58182cbf087595b319633281ec5a6e68 1678266 science optional dialign-tx-data_1.0.0-1_all.deb 10fc2ad374bd202917089bc9fa35dfc8 52550 science optional dialign-tx_1.0.0-1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/dialign-t-1.0.0 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --root=/home/buildd/build-608655-1538507/chroot-autobuild --purge intltool-debian groff-base m4 gettext file libhtml-parser-perl intltool automake1.7 cdbs libwww-perl liburi-perl html2text gettext-base debhelper libhtml-tree-perl ifupdown autotools-dev po-debconf net-tools libxml-parser-perl libmagic1 libhtml-tagset-perl libexpat1 netbase bsdmainutils fdupes update-inetd man-db autoconf (Reading database ... 12298 files and directories currently installed.) Removing cdbs ... Removing debhelper ... Removing po-debconf ... Removing fdupes ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db/examples' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/doc/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/share/bug/man-db' not empty so not removed. dpkg - warning: while removing man-db, directory `/usr/lib/man-db' not empty so not removed. Removing intltool-debian ... Removing groff-base ... Purging configuration files for groff-base ... Removing intltool ... Removing automake1.7 ... Removing html2text ... Purging configuration files for html2text ... Removing autotools-dev ... Removing libxml-parser-perl ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing autoconf ... Purging configuration files for autoconf ... Removing m4 ... Removing gettext ... Removing file ... Purging configuration files for file ... Removing libwww-perl ... Removing gettext-base ... Removing libhtml-tree-perl ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing netbase ... Purging configuration files for netbase ... Removing update-inetd ... Purging configuration files for update-inetd ... Removing libhtml-parser-perl ... Removing liburi-perl ... Removing ifupdown ... Purging configuration files for ifupdown ... Removing net-tools ... Removing libhtml-tagset-perl ... Processing triggers for libc6 ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20080515-1235 Build needed 00:00:20, 13848k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '608655-1538507'] Scanning for processes to kill in build 608655-1538507... Scanning for processes to kill in build /home/buildd/build-608655-1538507/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '608655-1538507'] Unmounting chroot for build 608655-1538507... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '608655-1538507'] Removing build 608655-1538507