Ubuntu
fasta3 package

fasta3 36.3.8h.2020-02-11-4 source package in Ubuntu

Changelog

fasta3 (36.3.8h.2020-02-11-4) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Team upload.
  * Install scripts, matrics, and misc scripts in
     /usr/share/fasta3/{scripts,data,misc}
  * Install all the example SQL scripts and data

  [ Steffen Moeller ]
  * Fix watchfile to detect new versions on github (routine-update)

  [ Andreas Tille ]
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Depends: python3

 -- Andreas Tille <email address hidden>  Thu, 09 Sep 2021 09:29:56 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Kinetic release multiverse misc
Jammy release multiverse misc

Downloads

File Size SHA-256 Checksum
fasta3_36.3.8h.2020-02-11-4.dsc 2.2 KiB 68221e981111529668a6d4dd6986bd710a99dfd1307b4396d3d27967de812c83
fasta3_36.3.8h.2020-02-11.orig.tar.gz 1.2 MiB 916b327ac996151c808bd7066dea59c4ecb6035fc27c27fa8f011d49548867d6
fasta3_36.3.8h.2020-02-11-4.debian.tar.xz 11.5 KiB 3d9336a59133761ffdee481fc0898ec4a3520b672f0f3ccb92329da58889c7b8

No changes file available.

Binary packages built by this source

fasta3: tools for searching collections of biological sequences

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
  * Protein
    - Protein-protein FASTA
    - Protein-protein Smith-Waterman (ssearch)
    - Global Protein-protein (Needleman-Wunsch) (ggsearch)
    - Global/Local protein-protein (glsearch)
    - Protein-protein with unordered peptides (fasts)
    - Protein-protein with mixed peptide sequences (fastf)
 .
  * Nucleotide
    - Nucleotide-Nucleotide (DNA/RNA fasta)
    - Ordered Nucleotides vs Nucleotide (fastm)
    - Un-ordered Nucleotides vs Nucleotide (fasts)
 .
  * Translated
    - Translated DNA (with frameshifts, e.g. ESTs)
      vs Proteins (fastx/fasty)
    - Protein vs Translated DNA (with frameshifts)
      (tfastx/tfasty)
    - Peptides vs Translated DNA (tfasts)
 .
  * Statistical Significance
    - Protein vs Protein shuffle (prss)
    - DNA vs DNA shuffle (prss)
    - Translated DNA vs Protein shuffle (prfx)
 .
  * Local Duplications
    - Local Protein alignments (lalign)
    - Plot Protein alignment "dot-plot" (plalign)
    - Local DNA alignments (lalign)
    - Plot DNA alignment "dot-plot" (plalign)
 .
 This software is often used via a web service at the
 EBI with readily indexed reference databases at
 http://www.ebi.ac.uk/Tools/fasta/.

fasta3-dbgsym: debug symbols for fasta3
fasta3-doc: user guide for FASTA tools

 The FASTA programs find regions of local or global similarity between
 Protein or DNA sequences, either by searching Protein or DNA databases,
 or by identifying local duplications within a sequence. Other
 programs provide information on the statistical significance of an
 alignment. Like BLAST, FASTA can be used to infer functional and
 evolutionary relationships between sequences as well as help identify
 members of gene families.
 .
 The use of the package's many binaries and the equally representated
 conceptual approaches towards sequence analyses are summarised in
 this PDF.