Ubuntu
fasttree package

fasttree 2.1.9-2 source package in Ubuntu

Changelog

fasttree (2.1.9-2) unstable; urgency=medium

  * Team upload
  
  [ Nadiya Sitdykova ]
  * Add simple autopkgtest test-suite 

  [ Graham Inggs ]
  * Switch to debhelper 10
  * Update debian/copyright
  * Bump Standards-Version to 4.0.0, no further changes

 -- Graham Inggs <email address hidden>  Thu, 29 Jun 2017 13:46:37 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
fasttree_2.1.9-2.dsc 2.0 KiB 243a7eac512084c8212d48b2702a48ed32a27fe0077ac592ece7e4190e161eba
fasttree_2.1.9.orig.tar.xz 92.3 KiB 53e4ff1bb7944cbaee792283b45e4ae2e1b176b76cffa3ce9dfcced892aa1614
fasttree_2.1.9-2.debian.tar.xz 32.8 KiB 4e4c80c67d69871c1b4d2fd8bd94e23c356046137df967d2d4303688ff03187c

No changes file available.

Binary packages built by this source

fasttree: phylogenetic trees from alignments of nucleotide or protein sequences

 FastTree infers approximately-maximum-likelihood phylogenetic trees from
 alignments of nucleotide or protein sequences. It handles alignments
 with up to a million of sequences in a reasonable amount of time and
 memory. For large alignments, FastTree is 100-1,000 times faster than
 PhyML 3.0 or RAxML 7.
 .
 FastTree is more accurate than PhyML 3 with default settings, and much
 more accurate than the distance-matrix methods that are traditionally
 used for large alignments. FastTree uses the Jukes-Cantor or generalized
 time-reversible (GTR) models of nucleotide evolution and the JTT
 (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account
 for the varying rates of evolution across sites, FastTree uses a single
 rate for each site (the "CAT" approximation). To quickly estimate the
 reliability of each split in the tree, FastTree computes local support
 values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's
 "SH-like local supports").
 .
 This package contains a single threaded version (fasttree) and a
 parallel version which uses OpenMP (fasttreMP).

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