htslib 1.5-4ubuntu1 source package in Ubuntu
Changelog
htslib (1.5-4ubuntu1) bionic; urgency=medium * Fix autopkgtest on i386 -- Graham Inggs <email address hidden> Fri, 24 Nov 2017 13:49:50 +0000
Upload details
- Uploaded by:
- Graham Inggs
- Uploaded to:
- Bionic
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| htslib_1.5.orig.tar.gz | 1.1 MiB | 237b16c204e45c1e3a3d8b60eab2102d15b0bba81951ebd3a8a36b723a279ee0 |
| htslib_1.5-4ubuntu1.debian.tar.xz | 13.6 KiB | b5cc8078d943284f7e711b334e365f109764d412001208219f2d7f0a35c16cc5 |
| htslib_1.5-4ubuntu1.dsc | 2.3 KiB | 0464455292a0bc378be4e5866aeed21525f617e5cab90c83af6da62e19c62a8c |
Available diffs
- diff from 1.5-1 (in Debian) to 1.5-4ubuntu1 (5.7 KiB)
- diff from 1.5-4 (in Debian) to 1.5-4ubuntu1 (647 bytes)
Binary packages built by this source
- htslib-test: Test data for HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains test files and scripts for the HTSlib.
- libhts-dev: development files for the HTSlib
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
.
This package contains development files for the HTSlib: headers, static
library, manual pages, etc.
- libhts2: C library for high-throughput sequencing data formats
HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call
Format), used for high-throughput sequencing data, and is the core library
used by samtools and bcftools. HTSlib only depends on zlib. It is known to be
compatible with gcc, g++ and clang.
.
HTSlib implements a generalized BAM (binary SAM) index, with file extension
‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the
new index and then for the old if the new index is absent.
- libhts2-dbgsym: debug symbols for libhts2
- tabix: generic indexer for TAB-delimited genome position files
Tabix indexes files where some columns indicate sequence coordinates: name
(usually a chromosome), start and stop. The input data file must be position
sorted and compressed by bgzip (provided in this package), which has a gzip
like interface. After indexing, tabix is able to quickly retrieve data lines by
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
.
This version of tabix is built from the HTSlib source.
- tabix-dbgsym: debug symbols for tabix
