muscle 1:5.1-1 source package in Ubuntu
Changelog
muscle (1:5.1-1) unstable; urgency=medium
* Muscle moved to Github and issued a rewritten release
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Add missing build dependency on dh addon.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Fix day-of-week for changelog entry 3.52-1.
* d/copyright: Fix source location
* d/rules: New source directory
* Do not provide outdated documentation
* No static linking
* New help2man based manpage
* Add NEWS to inform users about changed command line options
* Make long description more verbose about new version
-- Andreas Tille <email address hidden> Mon, 17 Jan 2022 15:13:06 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Kinetic | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| muscle_5.1-1.dsc | 2.0 KiB | 6799795b4b9cecd8130fe1be1594921ce6d6561d9f5e33ef69968a7fd47954b1 |
| muscle_5.1.orig.tar.gz | 179.6 KiB | 091d9f8733b92ff106c2a8eb274d1e5a57960d397a2068d8638d6002e8880dab |
| muscle_5.1-1.debian.tar.xz | 8.5 KiB | 54254e9cc4cd446788c10bdf45bc1e5abf34ac0da283a832bea3074db005ae44 |
Available diffs
No changes file available.
Binary packages built by this source
- muscle: Multiple alignment program of protein sequences
MUSCLE is a multiple alignment program for protein sequences. MUSCLE
stands for multiple sequence comparison by log-expectation. In the
authors tests, MUSCLE achieved the highest scores of all tested
programs on several alignment accuracy benchmarks, and is also one of
the fastest programs out there.
.
Muscle v5 is a major re-write of MUSCLE based on new algorithms.
.
Users should be aware that command line arguments compared to version
3.x of MUSCLE have changed!
.
Highest accuracy, scalable to thousands of sequences
.
Compared to previous versions, Muscle v5 is much more accurate, is often
faster, and scales to much larger datasets. At the time of writing (late
2021), Muscle v5 has the highest scores on multiple alignment benchmarks
including Balibase, Bralibase, Prefab and Balifam. It can align tens of
thousands of sequences with high accuracy on a low-cost commodity computer
(say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5
is 20-30% more accurate than MAFFT and Clustal-Omega.
.
Alignment ensembles
.
Muscle v5 can generate ensembles of high-accuracy alternative alignments.
All replicates have equal average accuracy on benchmark test, including
the MSA made with default parameters. By comparing results of downstream
analysis (trees, structure prediction...) on different replicates, you can
assess the effects of alignment errors on your study.
- muscle-dbgsym: debug symbols for muscle
