Ubuntu
phyml package

phyml 3:3.3.20220408-1 source package in Ubuntu

Changelog

phyml (3:3.3.20220408-1) unstable; urgency=medium

  * New upstream version
  * Refresh no-configure-ac-date.patch.
  * Refresh fix_declaration_of_temp.patch.
  * Refresh filter-sse3-intrinsics.patch.
  * Refresh typos.patch.

 -- Étienne Mollier <email address hidden>  Sun, 08 May 2022 16:41:07 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
phyml_3.3.20220408-1.dsc 2.2 KiB 97a31d162811f4bccf28283ffbd6bf3281daa9c84b52a56821fbcfd589d11556
phyml_3.3.20220408.orig.tar.gz 1.7 MiB 9cef375c0186e8a8d4db72ac02148707624c97174ffac244167a138ceb9f65bd
phyml_3.3.20220408-1.debian.tar.xz 26.1 KiB b7749eb25d49321634b6cc51af022c1f409ab98e0f35b98891d17a38ca89bec0

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Binary packages built by this source

phyml: Phylogenetic estimation using Maximum Likelihood

 PhyML is a software that estimates maximum likelihood phylogenies from
 alignments of nucleotide or amino acid sequences. It provides a wide
 range of options that were designed to facilitate standard phylogenetic
 analyses. The main strengths of PhyML lies in the large number of
 substitution models coupled to various options to search the space of
 phylogenetic tree topologies, going from very fast and efficient methods
 to slower but generally more accurate approaches. It also implements
 two methods to evaluate branch supports in a sound statistical framework
 (the non-parametric bootstrap and the approximate likelihood ratio test).
 .
 PhyML was designed to process moderate to large data sets. In theory,
 alignments with up to 4,000 sequences 2,000,000 character-long can
 be analyzed. In practice however, the amount of memory required to process
 a data set is proportional of the product of the number of sequences by their
 length. Hence, a large number of sequences can only be processed provided
 that they are short. Also, PhyML can handle long sequences provided that
 they are not numerous. With most standard personal computers, the “comfort
 zone” for PhyML generally lies around 3 to 500 sequences less than 2,000
 character long.
 .
 This package also includes PhyTime.

phyml-dbgsym: debug symbols for phyml