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scipy package

Change log for scipy package in Ubuntu

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Published in kinetic-updates
Published in kinetic-security 
scipy (1.8.1-10ubuntu0.22.10.1) kinetic-security; urgency=medium

  * SECURITY UPDATE: memory leak issue
    - debian/patches/CVE-2023-25399.patch: fix two refcounting issues in
      ndimage
    - CVE-2023-25399

 -- Nishit Majithia <email address hidden>  Wed, 12 Jul 2023 14:01:23 +0530
Published in mantic-release
Deleted in mantic-proposed (Reason: Moved to mantic) 
scipy (1.10.1-2) unstable; urgency=medium

  * Team upload.
  * armhf with openblas: skip test_L3
    test_svd_return_singular_vectors[shape1-True]
    test_m_gt_n test_pteqr test_SR1_skip_update
    test_symmetric_starting_vector
  * hppa: skip test_bootstrap_against_theory (not enough memory)
  * x32: skip test_sample (test_qmc.py)

 -- Drew Parsons <email address hidden>  Wed, 01 Mar 2023 15:41:11 +0100

Available diffs

Superseded in mantic-release
Published in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
scipy (1.10.1-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
    - bug fixes and stability improvements.
      Upload for bookworm (Bug#1032073).
    - applies debian patches
      find_cython3.patch
      fix_cast_PR17726.patch
      fix_highs_atomic_PR17777.patch
      pythran_type_PR16646.patch
      readonly_interpolate_PR17717.patch
  * allow optional VERSION argument for debian/get-submodules
    gbp import-orig, for instance, needs the submodule source to be
    already downloaded (before reported in debian/changelog).
    Submodule source is generated strictly for the indicated version
    if the git tag v$VERSION is available, otherwise git HEAD is used.
    - document submodule handling in debian/README.source.
    - note that get-submodules requires rsync
  * debian/copyright: add entry for submodules/scipy/_lib/boost
    License: Boost-1.0, 2008 John Maddock (boost/math) and other
    contributors. scipy only uses boost/math, the submodule will be
    simplified to booth_math in the future (upstream PR#17432).
  * x32: skip test_random_generator during build
  * riscv64 with atlas: skip runtime test test_aligned_mem
  * debian patch docs_privacy.patch deactivates net analytics sent to
    views.scientific-python.org. The site itself respects privacy, but
    traffic monitoring in the middle might breach privacy.
  * some dataset tests require internet: test_existence_all
    test_ascent test_face test_electrocardiogram.
    Run them separately in debian/tests/python3-network.

 -- Drew Parsons <email address hidden>  Tue, 28 Feb 2023 22:38:09 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-12) unstable; urgency=medium

  * Team upload.
  * x32: skip test_bounds during build
  * armhf with openblas: skip intermittently failing tests
    test_random_complex_exact test_L7 test_sygst
    test_various_drivers_standard test_various_drivers_generalized
    test_broyden1 test_broyden2 test_gejsv_general
    test_BFGS_skip_update test_tolerance_float32

 -- Drew Parsons <email address hidden>  Sat, 18 Feb 2023 16:12:32 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-11) unstable; urgency=medium

  * Team upload.
  * x32: skip test_1sample during build
  * armhf with openblas: skip more failing tests.
    test_tpqrt_tpmqrt test_cossin_separate test_orcsd_uncsd
    test_eigs_consistency[20-0.001] test_random_initial_float32
    test_pdist_out test_lsqr_basic test_pascal test_atol_rtol

 -- Drew Parsons <email address hidden>  Fri, 17 Feb 2023 22:45:22 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-10) unstable; urgency=medium

  * Team upload.
  * x32: skip test_0sample during build
  * armhf with openblas: arch is flaky, tests fail intermittently.
    Skip test_cdist_out test_cdist_calling_conventions
    test_orcsd_uncsd[float64] test_L1 test_L4
    test_random_exact test_random_tall_left test_random_tall_right
    test_svd_random_state_2[random_state test_svd_random_state_3
    test_svd_linop test_ElasticRod
    test_small_sigma_sparse[float32-shape1] test_small_sigma2[float]
    test_interpolation_misfit_1d test_svds_parameter_k_which[LM-5]
    test_Small test_failure_to_run_iterations
    test_precond_inverse[case1] test_examples
  * Consider using armhf with atlas or blis, not openblas.

 -- Drew Parsons <email address hidden>  Fri, 17 Feb 2023 10:34:17 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-9) unstable; urgency=medium

  * Team upload.
  * x32: skip test_0dim during build
  * armhf with openblas: skip failing sparse.linalg runtime tests
    eigen/lobpcg: test_MikotaPair test_diagonal[100-4-3] test_maxit
    eigen/svds: test_svd_random_state_3[random_state*
    isolve: test_precond_inverse[case1]
    propack: test_examples

 -- Drew Parsons <email address hidden>  Wed, 15 Feb 2023 19:36:32 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-8) unstable; urgency=medium

  * Team upload.
  * x32: skip test_integers_nd during build

 -- Drew Parsons <email address hidden>  Tue, 14 Feb 2023 23:07:52 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-6) unstable; urgency=medium

  * Team upload.
  * x32: skip test_flexible_input during build
  * skip failing run-time tests
    - armhf with openblas: test_cdist_dtype_equivalence
    - i386 with blis: test_value_subsets test_bug_6139 test_atol[cgs]
      test_propack test_various_drivers_standard
      test_trsyl test_gelsy test_hetrd test_hegst test_pftri
      test_pptrs_pptri_pptrf_ppsv_ppcon[complex
      test_gees_trsen[complex64] test_gges_tgsen[complex64]
    - riscv64 with atlas: test_bug_6139

 -- Drew Parsons <email address hidden>  Tue, 14 Feb 2023 17:24:21 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-5) unstable; urgency=medium

  * Team upload.
  * skip failing build tests
    - hurd-i386: test_pdf_nolan_samples[pct_range0-alpha_...
    - x32: skip build test test_sign
  * skip failing runtime tests (debian/tests)
    - i386 with blis: test_random_complex_overdet
    - armhf with openblas: test_cholesky
  * reintroduce and update debian patch
    hppa-boost-long-double-config.patch.
    Thanks Mattias Ellert. Closes: #1030947.

 -- Drew Parsons <email address hidden>  Fri, 10 Feb 2023 12:08:00 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-4) unstable; urgency=medium

  * Team upload.
  * skip more build-time tests
    - hurd-i386: test_find_peaks_exact test_find_peaks_withnoise
      test_examples[True-float64] test_rv_sample
      test_location_scale[pdf
    - x32: test_basic
  * update debian/tests
    - armhf with openblas: skip test_array_smoothing
    - i386 with blis: skip test_random_complex_exact
  * debian patch fix_cast_PR17726.patch applies upstream PR17726
    to fix 32-bit/64-bit casting. Closes: #1029690.
  * add Breaks: python3-skbio (<< 0.5.8-3~) to aid migration

 -- Drew Parsons <email address hidden>  Tue, 07 Feb 2023 09:49:03 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-3) unstable; urgency=medium

  * Team upload.
  * drop scipy/_lib/boost/ from debian/copyright
    (no longer provided in upstream source)
  * skip build-time tests
    - hurd-i386: test_mip1
    - ia64: test_maxiter_worsening[lgmres]
    - x32: test_input_validation
  * update skips in debian/tests:
    - i386: skip test_simple_overdet_complex with blis
    - armhf: skip test_rosenbrock_with_no_exception
  * update debian patch Use-system-LBFGSB.patch for the new meson build
    Closes: #1030142.

 -- Drew Parsons <email address hidden>  Fri, 03 Feb 2023 10:48:29 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.10.0-2) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * Add missing copyright for submodules

  [ Drew Parsons ]
  * update debian/tests
    - i386: fix test skips
    - armel: skip test_brunnermunzel_normal_dist
    - armhf with openblas: skip test_pdist_calling_conventions
      test_pdist_dtype_equivalence test_striding
    - s390x with atlas: skip test_aligned_mem
  * debian patch readonly_interpolate_PR17717.patch applies upstream
    PR17717 to fix interpolate.interpn. Closes: #1029692.
  * drop debian patch fix_numpy1.24_PR17035.patch (applied upstream)

 -- Drew Parsons <email address hidden>  Sun, 29 Jan 2023 10:13:42 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-22) unstable; urgency=medium

  * Team upload.
  * skip test_atol[bicg] on s390x. Closes: #1029550.

 -- Drew Parsons <email address hidden>  Wed, 25 Jan 2023 15:32:10 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-21) unstable; urgency=medium

  * Team upload.
  * debian patch fix_numpy1.24_PR17035.patch applies upstream PR17035
    to fix build with numpy 1.24. Closes: #1027244

 -- Drew Parsons <email address hidden>  Thu, 19 Jan 2023 14:54:51 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-20) unstable; urgency=medium

  * Team upload.
  * Fix sphinx build with Python 3.11

 -- Jochen Sprickerhof <email address hidden>  Tue, 03 Jan 2023 21:59:59 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-19) unstable; urgency=medium

  * Team upload.
  * Add upstream patch to fix flapack (Closes: #1027460)
  * Add upstream patch for numpy 1.24
  * Use dh-sequence-*

 -- Jochen Sprickerhof <email address hidden>  Tue, 03 Jan 2023 11:32:39 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-18) unstable; urgency=medium

  * Team upload.
  * Skip one more failing test on ppc64el

 -- Jochen Sprickerhof <email address hidden>  Mon, 26 Dec 2022 09:33:52 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-17) unstable; urgency=medium

  * Team upload.
  * Ignore some test in autopkgtests

 -- Jochen Sprickerhof <email address hidden>  Sun, 25 Dec 2022 12:03:29 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-16) unstable; urgency=medium

  * Team upload.
  * Ignore some failing unit tests on some archs

 -- Jochen Sprickerhof <email address hidden>  Fri, 23 Dec 2022 23:53:47 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-15) unstable; urgency=medium

  * Team upload.
  * Fix FTBFS with new numpy (deprecated numpy.distutils)
    (Closes: #1026210, #1026342, #1026516)
  * Add workaround for FTBFS with new sphinx
  * Ignore test failure on armel (Closes: #1025699)

 -- Jochen Sprickerhof <email address hidden>  Tue, 20 Dec 2022 19:47:35 +0100

Available diffs

Superseded in lunar-proposed 
scipy (1.8.1-10build1) lunar; urgency=medium

  * No-change rebuild with Python 3.11 as supported

 -- Graham Inggs <email address hidden>  Thu, 03 Nov 2022 06:33:42 +0000
Superseded in lunar-release
Deleted in lunar-proposed (Reason: Moved to lunar) 
scipy (1.8.1-14) unstable; urgency=medium

  * Team upload.
  * debian/tests: skip all test_complex* tests on i386 with blis
  * once again drop pythran support on armhf.
    Still causes many packages to fail tests even after revised
    version of PR16646 (possibly due to memory exhaustion?)

 -- Drew Parsons <email address hidden>  Thu, 08 Sep 2022 16:01:54 +0200
Superseded in lunar-release
Published in kinetic-release
Deleted in kinetic-proposed (Reason: Moved to kinetic) 
scipy (1.8.1-10) unstable; urgency=medium

  * Team upload.
  * skip TestSmirnovp (test_kolmogorov) also on hurd-i386
  * skip test_first_step and test_classes on mips64el
    (integrate/_ivp/tests/test_ivp.py)
    See https://github.com/scipy/scipy/issues/16883
  * skip test_large_rank_deficient on armhf with blis. Segfaults in
    test_lsq_linear.py::TestBVLS
  * once again drop pythran support on armhf.
    It does work successfully, but shifts numerical results enough to
    break tests on a dozen packages (astropy, pandas, pyfai, skimage etc)

 -- Drew Parsons <email address hidden>  Wed, 24 Aug 2022 11:43:19 +0200
Superseded in kinetic-proposed 
scipy (1.8.1-9) unstable; urgency=medium

  * Team upload.
  * drop asyncio_mode=auto from debian patch manage_tests.patch.
    Only relevant when python3-pytest-asyncio is installed
    (causes errors if not installed, but scipy doesn't need it)
  * use runtests.py to manage build-time tests
  * skip failing tests
    - signal TestMLS fails due to broken pythran support on 32 bit
      arches. See Bug#1017862.
    - special test_kolmogorov.py (TestSmirnovp) segfaults on i386.
      Closes: Bug#1017864.
    - stats test_cont_basic[500-200-ncf-arg74] fails with
      IntegrationWarning. See upstream Issue 14519
  * update debian/watch (uscan) for latest github format

 -- Drew Parsons <email address hidden>  Mon, 22 Aug 2022 17:24:17 +0200
Superseded in kinetic-release
Published in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
scipy (1.8.0-1exp2ubuntu1) jammy; urgency=medium

  * Ignore distutils deprecation warnings in doc build

 -- Graham Inggs <email address hidden>  Thu, 31 Mar 2022 17:45:01 +0000
Superseded in jammy-proposed 
scipy (1.8.0-1exp2build1) jammy; urgency=medium

  * No-change rebuild with Python 3.10 only

 -- Graham Inggs <email address hidden>  Wed, 16 Mar 2022 23:53:26 +0000
Superseded in jammy-proposed 
scipy (1.8.0-1exp2) experimental; urgency=medium

  * build scipy with pythran support where available [amd64 arm64 m68k]
    Depends: python3-pythran [amd64 arm64 m68k]
    Closes: #991753.

 -- Drew Parsons <email address hidden>  Tue, 15 Feb 2022 01:41:52 +0100
Superseded in jammy-release
Deleted in jammy-proposed (Reason: Moved to jammy) 
scipy (1.7.1-1ubuntu1) jammy; urgency=medium

  * Do not build the python3-scipy-dbg package, see #994375

 -- Graham Inggs <email address hidden>  Sat, 23 Oct 2021 14:38:19 +0000
Superseded in jammy-proposed 
scipy (1.6.0-2build1) jammy; urgency=medium

  * No-change rebuild to add python3.10.

 -- Matthias Klose <email address hidden>  Sun, 17 Oct 2021 15:59:38 +0200
Superseded in jammy-proposed 
scipy (1.7.1-1) unstable; urgency=medium

  * Team upload.

  [ Debian Janitor ]
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

  [ Drew Parsons ]
  * New upstream release
  * update upper-versioned Build-Depends
    - python3-numpy (<< 1.23.0) (see pyproject.toml)
    - python3-pybind11 (<< 2.8) (build is stable with pybind11 2.7)

 -- Drew Parsons <email address hidden>  Wed, 18 Aug 2021 02:07:15 +0200
Superseded in jammy-release
Obsolete in impish-release
Obsolete in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
scipy (1.6.0-2) unstable; urgency=medium

  * Team upload.
  * upload new upstream version to unstable

 -- Drew Parsons <email address hidden>  Sat, 16 Jan 2021 23:26:56 +1100
Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
scipy (1.5.4-1build1) hirsute; urgency=medium

  * No-change rebuild to drop python3.8 extensions.

 -- Matthias Klose <email address hidden>  Mon, 07 Dec 2020 18:22:16 +0100
Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
scipy (1.5.4-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.

 -- Drew Parsons <email address hidden>  Sat, 14 Nov 2020 13:36:06 +0800
Superseded in hirsute-proposed 
scipy (1.5.3-2) unstable; urgency=medium

  * Team upload.
  * push new upstream release to unstable

 -- Drew Parsons <email address hidden>  Thu, 05 Nov 2020 03:33:52 +0800
Superseded in hirsute-release
Deleted in hirsute-proposed (Reason: moved to Release) 
scipy (1.5.2-2build1) hirsute; urgency=medium

  * No-change rebuild to build with python3.9 as supported.

 -- Matthias Klose <email address hidden>  Sat, 24 Oct 2020 13:18:53 +0200
Superseded in hirsute-release
Obsolete in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
scipy (1.5.2-2) unstable; urgency=medium

  * Team upload.
  * debian/tests (autopkgtest): add a new test case using BLAS=libblis3

 -- Drew Parsons <email address hidden>  Sat, 01 Aug 2020 12:49:57 +0800

Available diffs

Superseded in groovy-release
Deleted in groovy-proposed (Reason: moved to Release) 
scipy (1.4.1-2) unstable; urgency=medium

  * Team upload.
  * bring new upstream version to unstable

 -- Drew Parsons <email address hidden>  Sat, 18 Apr 2020 11:08:42 +0800
Superseded in groovy-release
Published in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
scipy (1.3.3-3build1) focal; urgency=medium

  * No-change rebuild to drop python3.7.

 -- Matthias Klose <email address hidden>  Tue, 18 Feb 2020 10:47:04 +0100
Superseded in focal-release
Deleted in focal-proposed (Reason: moved to Release) 
scipy (1.3.3-3) unstable; urgency=medium

  * Team upload.
  * skip sparsetools.TestInt32Overflow tests test_bsr_1_block and
    test_bsr_n_block (they regularly timeout)

 -- Drew Parsons <email address hidden>  Fri, 06 Dec 2019 10:22:05 +0800

Available diffs

Superseded in focal-proposed 
scipy (1.3.3-2) unstable; urgency=medium

  * Team upload.
  * add debian patches to avoid internet connections when using docs
    - css_font_OpenSans.patch adapts font settings from
      https://fonts.googleapis.com/css?family=Open+Sans
      (Apache 2.0 licence)
    - css_font_local.patch uses local font_OpenSans.css from
      css_font_OpenSans.patch
    - python-scipy-doc Depends: fonts-open-sans
    - Closes: #873433.
  * debian patch fix_custom_sampling_input_2b3ed61.patch applies
    upstream commit 2b3ed61 to fix syntax. Closes: #945093.

 -- Drew Parsons <email address hidden>  Thu, 05 Dec 2019 00:30:25 +0800
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