https://launchpad.net/ubuntu/+source/tigr-glimmer/3.02b-6/+build/22308402 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy01-amd64-028 4.15.0-159-generic #167-Ubuntu SMP Tue Sep 21 08:55:05 UTC 2021 x86_64 Buildd toolchain package versions: launchpad-buildd_203~505~ubuntu18.04.1 python3-lpbuildd_203~505~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 19 Oct 09:58:58 ntpdate[1767]: adjust time server 10.211.37.1 offset 0.178426 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22308402 --image-type chroot /home/buildd/filecache-default/cfae87993459679a6aa555d9d98919b1d8858654 Creating target for build PACKAGEBUILD-22308402 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22308402 Starting target for build PACKAGEBUILD-22308402 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22308402 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22308402 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22308402 Updating target for build PACKAGEBUILD-22308402 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [224 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 Packages [1400 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [512 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe amd64 Packages [13.1 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5463 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 Packages [196 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [81.4 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe amd64 Packages [1051 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [566 kB] Fetched 22.8 MB in 3s (6622 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files base-passwd bsdutils bzip2 ca-certificates coreutils debianutils fakeroot gzip libapparmor1 libargon2-1 libattr1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap-ng0 libcap2 libcrypt-dev libcrypt1 libdb5.3 libdebconfclient0 libfakeroot libgdbm-compat4 libgdbm6 libgmp10 libgpg-error0 libgssapi-krb5-2 libhogweed6 libidn2-0 libip4tc2 libisl23 libjson-c5 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblz4-1 liblzma5 libmount1 libmpc3 libmpfr6 libncurses6 libncursesw6 libnettle8 libnpth0 libp11-kit0 libpcre3 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libtasn1-6 libtinfo6 libuuid1 libzstd1 lockfile-progs make mawk mount ncurses-base ncurses-bin optipng patch pinentry-curses readline-common sed sensible-utils sysvinit-utils tar util-linux xz-utils 75 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 12.1 MB of archives. After this operation, 1209 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt-dev amd64 1:4.4.18-4ubuntu2 [111 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main amd64 libcrypt1 amd64 1:4.4.18-4ubuntu2 [82.0 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main amd64 base-files amd64 12ubuntu1 [63.3 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 bsdutils amd64 1:2.36.1-8ubuntu2 [82.8 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main amd64 coreutils amd64 8.32-4ubuntu3 [1436 kB] Get:6 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 debianutils amd64 5.5-1 [77.5 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main amd64 gzip amd64 1.10-4ubuntu2 [95.6 kB] Get:8 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libncurses6 amd64 6.2+20210905-1 [110 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libncursesw6 amd64 6.2+20210905-1 [147 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libtinfo6 amd64 6.2+20210905-1 [104 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ncurses-bin amd64 6.2+20210905-1 [181 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main amd64 sed amd64 4.7-1ubuntu2 [187 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main amd64 tar amd64 1.34+dfsg-1build2 [295 kB] Get:14 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 util-linux amd64 2.36.1-8ubuntu2 [1014 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main amd64 libdebconfclient0 amd64 0.256ubuntu4 [6306 B] Get:16 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 base-passwd amd64 3.5.52 [49.0 kB] Get:17 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ncurses-base all 6.2+20210905-1 [19.9 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main amd64 sysvinit-utils amd64 2.96-7ubuntu2 [20.8 kB] Get:19 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 mount amd64 2.36.1-8ubuntu2 [110 kB] Get:20 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libattr1 amd64 1:2.5.1-1 [13.3 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit-common all 1:3.0-2ubuntu3 [4688 B] Get:22 http://ftpmaster.internal/ubuntu jammy/main amd64 libcap-ng0 amd64 0.7.9-2.2build2 [11.6 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main amd64 libaudit1 amd64 1:3.0-2ubuntu3 [45.9 kB] Get:24 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libblkid1 amd64 2.36.1-8ubuntu2 [98.2 kB] Get:25 http://ftpmaster.internal/ubuntu jammy/main amd64 bzip2 amd64 1.0.8-4ubuntu4 [34.8 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main amd64 libbz2-1.0 amd64 1.0.8-4ubuntu4 [34.1 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main amd64 libcap2 amd64 1:2.44-1build2 [18.1 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main amd64 libdb5.3 amd64 5.3.28+dfsg1-0.8ubuntu2 [721 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main amd64 libgmp10 amd64 2:6.2.1+dfsg-1ubuntu3 [253 kB] Get:30 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgpg-error0 amd64 1.42-3 [68.1 kB] Get:31 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libk5crypto3 amd64 1.18.3-7 [86.2 kB] Get:32 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkrb5support0 amd64 1.18.3-7 [32.2 kB] Get:33 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libkrb5-3 amd64 1.18.3-7 [355 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgssapi-krb5-2 amd64 1.18.3-7 [143 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main amd64 libkeyutils1 amd64 1.6.1-2ubuntu2 [10.3 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main amd64 liblz4-1 amd64 1.9.3-2build1 [57.1 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main amd64 liblzma5 amd64 5.2.5-2build1 [99.8 kB] Get:38 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libselinux1 amd64 3.1-3build3 [74.2 kB] Get:39 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmount1 amd64 2.36.1-8ubuntu2 [116 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main amd64 libpcre3 amd64 2:8.39-13build4 [245 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage-common all 3.1-1ubuntu3 [9606 B] Get:42 http://ftpmaster.internal/ubuntu jammy/main amd64 libsemanage1 amd64 3.1-1ubuntu3 [96.5 kB] Get:43 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsmartcols1 amd64 2.36.1-8ubuntu2 [49.6 kB] Get:44 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libuuid1 amd64 2.36.1-8ubuntu2 [23.3 kB] Get:45 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libzstd1 amd64 1.4.8+dfsg-3 [324 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main amd64 libnettle8 amd64 3.7.3-1build1 [159 kB] Get:47 http://ftpmaster.internal/ubuntu jammy/main amd64 libhogweed6 amd64 3.7.3-1build1 [199 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libidn2-0 amd64 2.3.2-2 [66.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libp11-kit0 amd64 0.24.0-5 [252 kB] Get:50 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libseccomp2 amd64 2.5.1-1ubuntu2 [48.2 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main amd64 libtasn1-6 amd64 4.16.0-2build1 [42.9 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main amd64 mawk amd64 1.3.4.20200120-2build1 [103 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 sensible-utils all 0.0.17 [20.1 kB] Get:54 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 ca-certificates all 20211016 [148 kB] Get:55 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libapparmor1 amd64 3.0.3-0ubuntu2 [37.8 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main amd64 libargon2-1 amd64 0~20171227-0.2build22 [19.4 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main amd64 libip4tc2 amd64 1.8.7-1ubuntu3 [19.7 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main amd64 libjson-c5 amd64 0.15-2build3 [33.3 kB] Get:59 http://ftpmaster.internal/ubuntu jammy/main amd64 readline-common all 8.1-2build1 [53.6 kB] Get:60 http://ftpmaster.internal/ubuntu jammy/main amd64 libreadline8 amd64 8.1-2build1 [153 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libsqlite3-0 amd64 3.36.0-2 [641 kB] Get:62 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgdbm6 amd64 1.21-1 [35.1 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main amd64 xz-utils amd64 5.2.5-2build1 [84.7 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main amd64 libfakeroot amd64 1.25.3-1.1ubuntu3 [31.7 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main amd64 fakeroot amd64 1.25.3-1.1ubuntu3 [60.3 kB] Get:66 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libgdbm-compat4 amd64 1.21-1 [6500 B] Get:67 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libisl23 amd64 0.24-2 [728 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main amd64 libmpfr6 amd64 4.1.0-3build2 [1425 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main amd64 libnpth0 amd64 1.6-3build1 [8686 B] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 lockfile-progs amd64 0.1.19 [10.0 kB] Get:71 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 make amd64 4.3-4ubuntu2 [179 kB] Get:72 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 optipng amd64 0.7.7-2 [84.7 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main amd64 patch amd64 2.7.6-7build1 [109 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main amd64 pinentry-curses amd64 1.1.1-1build1 [34.3 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main amd64 libmpc3 amd64 1.2.1-1 [46.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.1 MB in 0s (35.8 MB/s) (Reading database ... 13258 files and directories currently installed.) 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Setting up libcrypt-dev:amd64 (1:4.4.18-4ubuntu2) ... Setting up mawk (1.3.4.20200120-2build1) ... Setting up libisl23:amd64 (0.24-2) ... Setting up libjson-c5:amd64 (0.15-2build3) ... Setting up readline-common (8.1-2build1) ... Setting up libgdbm6:amd64 (1.21-1) ... Setting up pinentry-curses (1.1.1-1build1) ... Setting up libreadline8:amd64 (8.1-2build1) ... Setting up libgdbm-compat4:amd64 (1.21-1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22308402 amd64 jammy-proposed -c chroot:build-PACKAGEBUILD-22308402 --arch=amd64 --dist=jammy-proposed --nolog -A tigr-glimmer_3.02b-6.dsc Initiating build PACKAGEBUILD-22308402 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-159-generic #167-Ubuntu SMP Tue Sep 21 08:55:05 UTC 2021 x86_64 sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on lcy01-amd64-028.buildd +==============================================================================+ | tigr-glimmer 3.02b-6 (amd64) Tue, 19 Oct 2021 09:59:19 +0000 | +==============================================================================+ Package: tigr-glimmer Version: 3.02b-6 Source Version: 3.02b-6 Distribution: jammy-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22308402/chroot-autobuild' with '<<CHROOT>>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- tigr-glimmer_3.02b-6.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/tigr-glimmer-CCWXbZ/tigr-glimmer-3.02b' with '<<PKGBUILDDIR>>' I: NOTICE: Log filtering will replace 'build/tigr-glimmer-CCWXbZ' with '<<BUILDDIR>>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-LnP7N5/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ InRelease Get:2 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Release [957 B] Ign:3 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Release.gpg Get:4 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Sources [349 B] Get:5 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Packages [431 B] Fetched 1737 B in 0s (151 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 652 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [652 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 652 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13260 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13) Filtered Build-Depends: debhelper-compat (= 13) dpkg-deb: building package 'sbuild-build-depends-tigr-glimmer-dummy' in '/<<BUILDDIR>>/resolver-LnP7N5/apt_archive/sbuild-build-depends-tigr-glimmer-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tigr-glimmer-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ InRelease Get:2 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Release [963 B] Ign:3 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Release.gpg Get:4 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Sources [496 B] Get:5 copy:/<<BUILDDIR>>/resolver-LnP7N5/apt_archive ./ Packages [573 B] Fetched 2032 B in 0s (0 B/s) Reading package lists... Reading package lists... Install tigr-glimmer build dependencies (apt-based resolver) ------------------------------------------------------------ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-tigr-glimmer-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After this operation, 63.5 MB of additional disk space will be used. 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Setting up gettext-base (0.21-4ubuntu3) ... Setting up file (1:5.39-3build1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:amd64 (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libuchardet0:amd64 (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:amd64 (0.185-2) ... Setting up libxml2:amd64 (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libdw1:amd64 (0.185-2) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-0ubuntu2) ... Setting up automake (1:1.16.4-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4ubuntu2) ... Setting up sbuild-build-depends-tigr-glimmer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-159-generic amd64 (x86_64) Toolchain package versions: binutils_2.37-7ubuntu1 dpkg-dev_1.20.9ubuntu2 g++-11_11.2.0-7ubuntu2 gcc-11_11.2.0-7ubuntu2 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 linux-libc-dev_5.13.0-19.19 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu1 base-passwd_3.5.52 bash_5.1-3ubuntu2 binutils_2.37-7ubuntu1 binutils-common_2.37-7ubuntu1 binutils-x86-64-linux-gnu_2.37-7ubuntu1 bsdextrautils_2.36.1-8ubuntu2 bsdutils_1:2.36.1-8ubuntu2 build-essential_12.9ubuntu2 bzip2_1.0.8-4ubuntu4 ca-certificates_20211016 coreutils_8.32-4ubuntu3 cpp_4:11.2.0-1ubuntu1 cpp-11_11.2.0-7ubuntu2 dash_0.5.11+git20210120+802ebd4-1build1 debconf_1.5.77 debhelper_13.3.4ubuntu2 debianutils_5.5-1 debugedit_1:5.0-0ubuntu2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.8-0ubuntu1 dpkg_1.20.9ubuntu2 dpkg-dev_1.20.9ubuntu2 dwz_0.14-1build1 e2fsprogs_1.46.3-1ubuntu3 fakeroot_1.25.3-1.1ubuntu3 file_1:5.39-3build1 findutils_4.8.0-1ubuntu2 g++_4:11.2.0-1ubuntu1 g++-11_11.2.0-7ubuntu2 gcc_4:11.2.0-1ubuntu1 gcc-11_11.2.0-7ubuntu2 gcc-11-base_11.2.0-7ubuntu2 gettext_0.21-4ubuntu3 gettext-base_0.21-4ubuntu3 gpg_2.2.20-1ubuntu4 gpg-agent_2.2.20-1ubuntu4 gpgconf_2.2.20-1ubuntu4 gpgv_2.2.20-1ubuntu4 grep_3.7-0ubuntu1 groff-base_1.22.4-7 gzip_1.10-4ubuntu2 hostname_3.23ubuntu1 init_1.60build1 init-system-helpers_1.60build1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10ubuntu2 libapparmor1_3.0.3-0ubuntu2 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.2build22 libasan6_11.2.0-7ubuntu2 libassuan0_2.5.5-1 libatomic1_11.2.0-7ubuntu2 libattr1_1:2.5.1-1 libaudit-common_1:3.0-2ubuntu3 libaudit1_1:3.0-2ubuntu3 libbinutils_2.37-7ubuntu1 libblkid1_2.36.1-8ubuntu2 libbz2-1.0_1.0.8-4ubuntu4 libc-bin_2.34-0ubuntu3 libc-dev-bin_2.34-0ubuntu3 libc6_2.34-0ubuntu3 libc6-dev_2.34-0ubuntu3 libcap-ng0_0.7.9-2.2build2 libcap2_1:2.44-1build2 libcc1-0_11.2.0-7ubuntu2 libcom-err2_1.46.3-1ubuntu3 libcrypt-dev_1:4.4.18-4ubuntu2 libcrypt1_1:4.4.18-4ubuntu2 libcryptsetup12_2:2.3.6-0ubuntu1 libctf-nobfd0_2.37-7ubuntu1 libctf0_2.37-7ubuntu1 libdb5.3_5.3.28+dfsg1-0.8ubuntu2 libdebconfclient0_0.256ubuntu4 libdebhelper-perl_13.3.4ubuntu2 libdevmapper1.02.1_2:1.02.175-2.1ubuntu3 libdpkg-perl_1.20.9ubuntu2 libdw1_0.185-2 libelf1_0.185-2 libext2fs2_1.46.3-1ubuntu3 libfakeroot_1.25.3-1.1ubuntu3 libffi8_3.4.2-1ubuntu5 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-11-dev_11.2.0-7ubuntu2 libgcc-s1_11.2.0-7ubuntu2 libgcrypt20_1.8.7-5ubuntu2 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-1ubuntu3 libgnutls30_3.7.1-5ubuntu1 libgomp1_11.2.0-7ubuntu2 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1build1 libicu67_67.1-7ubuntu1 libidn2-0_2.3.2-2 libip4tc2_1.8.7-1ubuntu3 libisl23_0.24-2 libitm1_11.2.0-7ubuntu2 libjson-c5_0.15-2build3 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2ubuntu2 libkmod2_28-1ubuntu4 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblockfile-bin_1.17-1build1 liblockfile1_1.17-1build1 liblsan0_11.2.0-7ubuntu2 liblz4-1_1.9.3-2build1 liblzma5_5.2.5-2build1 libmagic-mgc_1:5.39-3build1 libmagic1_1:5.39-3build1 libmount1_2.36.1-8ubuntu2 libmpc3_1.2.1-1 libmpfr6_4.1.0-3build2 libncurses6_6.2+20210905-1 libncursesw6_6.2+20210905-1 libnettle8_3.7.3-1build1 libnpth0_1.6-3build1 libnsl-dev_1.3.0-2build1 libnsl2_1.3.0-2build1 libp11-kit0_0.24.0-5 libpam-modules_1.3.1-5ubuntu11 libpam-modules-bin_1.3.1-5ubuntu11 libpam-runtime_1.3.1-5ubuntu11 libpam0g_1.3.1-5ubuntu11 libpcre2-8-0_10.37-0ubuntu2 libpcre3_2:8.39-13build4 libperl5.32_5.32.1-3ubuntu3 libpipeline1_1.5.3-1build1 libpng16-16_1.6.37-3build4 libprocps8_2:3.3.17-5ubuntu3 libquadmath0_11.2.0-7ubuntu2 libreadline8_8.1-2build1 libseccomp2_2.5.1-1ubuntu2 libselinux1_3.1-3build3 libsemanage-common_3.1-1ubuntu3 libsemanage1_3.1-1ubuntu3 libsepol1_3.1-1ubuntu2 libsigsegv2_2.13-1ubuntu2 libsmartcols1_2.36.1-8ubuntu2 libsqlite3-0_3.36.0-2 libss2_1.46.3-1ubuntu3 libssl1.1_1.1.1l-1ubuntu1 libstdc++-11-dev_11.2.0-7ubuntu2 libstdc++6_11.2.0-7ubuntu2 libsub-override-perl_0.09-2 libsystemd0_248.3-1ubuntu8 libtasn1-6_4.16.0-2build1 libtinfo6_6.2+20210905-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15build1 libtsan0_11.2.0-7ubuntu2 libubsan1_11.2.0-7ubuntu2 libuchardet0_0.0.7-1build1 libudev1_248.3-1ubuntu8 libunistring2_0.9.10-6 libuuid1_2.36.1-8ubuntu2 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2build1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.13.0-19.19 lockfile-progs_0.1.19 login_1:4.8.1-1ubuntu9 logsave_1.46.3-1ubuntu3 lsb-base_11.1.0ubuntu3 lto-disabled-list_16 m4_1.4.18-5ubuntu1 make_4.3-4ubuntu2 man-db_2.9.4-2build1 mawk_1.3.4.20200120-2build1 mount_2.36.1-8ubuntu2 ncurses-base_6.2+20210905-1 ncurses-bin_6.2+20210905-1 openssl_1.1.1l-1ubuntu1 optipng_0.7.7-2 passwd_1:4.8.1-1ubuntu9 patch_2.7.6-7build1 perl_5.32.1-3ubuntu3 perl-base_5.32.1-3ubuntu3 perl-modules-5.32_5.32.1-3ubuntu3 pinentry-curses_1.1.1-1build1 pkgbinarymangler_148 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3 procps_2:3.3.17-5ubuntu3 readline-common_8.1-2build1 rpcsvc-proto_1.4.2-0ubuntu5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tigr-glimmer-dummy_0.invalid.0 sed_4.7-1ubuntu2 sensible-utils_0.0.17 systemd_248.3-1ubuntu8 systemd-sysv_248.3-1ubuntu8 systemd-timesyncd_248.3-1ubuntu8 sysvinit-utils_2.96-7ubuntu2 tar_1.34+dfsg-1build2 tzdata_2021a-2ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_25ubuntu1 util-linux_2.36.1-8ubuntu2 xz-utils_5.2.5-2build1 zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sat Oct 16 18:40:48 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tigr-glimmer_3.02b-6.dsc dpkg-source: info: extracting tigr-glimmer in /<<PKGBUILDDIR>> dpkg-source: info: unpacking tigr-glimmer_3.02b.orig.tar.gz dpkg-source: info: unpacking tigr-glimmer_3.02b-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_gcc4.3.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying make-errs.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22308402 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22308402 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22308402 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package tigr-glimmer dpkg-buildpackage: info: source version 3.02b-6 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_clean cd src; make clean make[2]: Entering directory '/<<PKGBUILDDIR>>/src' cd /<<PKGBUILDDIR>>/obj; rm -f cd /<<PKGBUILDDIR>>/lib; rm -f cd /<<PKGBUILDDIR>>/bin; rm -f rm -f echo "* Make Target is " clean; * Make Target is clean set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " clean " #####"; make clean; cd ..; fi; done; ##### Making Directory /<<PKGBUILDDIR>>/src/Common clean ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common' if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; cd /<<PKGBUILDDIR>>/obj; rm -f delcher.o fasta.o gene.o cd /<<PKGBUILDDIR>>/lib; rm -f libGLMcommon.a cd /<<PKGBUILDDIR>>/bin; rm -f rm -f delcher.d fasta.d gene.d make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common' ##### Making Directory /<<PKGBUILDDIR>>/src/ICM clean ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM' if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; cd /<<PKGBUILDDIR>>/obj; rm -f icm.o build-icm.o build-fixed.o score-fixed.o cd /<<PKGBUILDDIR>>/lib; rm -f libGLMicm.a cd /<<PKGBUILDDIR>>/bin; rm -f build-icm build-fixed score-fixed rm -f icm.d build-icm.d build-fixed.d score-fixed.d make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM' ##### Making Directory /<<PKGBUILDDIR>>/src/Glimmer clean ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer' if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; cd /<<PKGBUILDDIR>>/obj; rm -f anomaly.o glimmer3.o long-orfs.o test.o cd /<<PKGBUILDDIR>>/lib; rm -f cd /<<PKGBUILDDIR>>/bin; rm -f anomaly glimmer3 long-orfs test rm -f anomaly.d glimmer3.d long-orfs.d test.d make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer' ##### Making Directory /<<PKGBUILDDIR>>/src/Util clean ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util' if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; cd /<<PKGBUILDDIR>>/obj; rm -f entropy-profile.o entropy-score.o extract.o multi-extract.o start-codon-distrib.o uncovered.o window-acgt.o cd /<<PKGBUILDDIR>>/lib; rm -f cd /<<PKGBUILDDIR>>/bin; rm -f entropy-profile entropy-score extract multi-extract start-codon-distrib uncovered window-acgt rm -f entropy-profile.d entropy-score.d extract.d multi-extract.d start-codon-distrib.d uncovered.d window-acgt.d make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util' make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' rm -f bin/* lib/* obj/* make[1]: Leaving directory '/<<PKGBUILDDIR>>' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/<<PKGBUILDDIR>>' dh_auto_build --sourcedirectory=src -- CFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" CXXFLAGS="-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" cd src && make -j4 "INSTALL=install --strip-program=true" "CFLAGS=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2" "CXXFLAGS=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<<PKGBUILDDIR>>/src' TGT=objs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<<PKGBUILDDIR>>/src/Common all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e gene.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc gene.cc \ | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \ fi ; if [ -e fasta.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc fasta.cc \ | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \ fi ; if [ -e delcher.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc delcher.cc \ | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ delcher.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e delcher.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/delcher.o delcher.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" delcher.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ fasta.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e fasta.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/fasta.o fasta.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" fasta.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ gene.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e gene.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/gene.o gene.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" gene.o ; \ fi ; gene.cc: In member function ‘bool PWM_t::Read(FILE*)’: gene.cc:319:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fscanf (fp, "%d", & width); | ~~~~~~~^~~~~~~~~~~~~~~~~~~ gene.cc:332:14: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 332 | fscanf (fp, "%s", tag); // skip tag in first column | ~~~~~~~^~~~~~~~~~~~~~~ gene.cc:335:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fscanf (fp, "%lf", & x); | ~~~~~~~^~~~~~~~~~~~~~~~ gene.cc: In function ‘int Read_String(FILE*, char*&, long int&, char*, int)’: gene.cc:848:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 848 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ################### libGLMcommon.a ##################### cd /<<PKGBUILDDIR>>/obj && \ ar rvs /<<PKGBUILDDIR>>/lib/libGLMcommon.a delcher.o fasta.o gene.o ar: creating /<<PKGBUILDDIR>>/lib/libGLMcommon.a a - delcher.o a - fasta.o a - gene.o make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common' ##### Making Directory /<<PKGBUILDDIR>>/src/ICM all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e score-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc score-fixed.cc \ | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \ fi ; if [ -e build-fixed.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc build-fixed.cc \ | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \ fi ; if [ -e build-icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc build-icm.cc \ | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \ fi ; if [ -e icm.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc icm.cc \ | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e icm.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/icm.o icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" icm.o ; \ fi ; icm.cc: In member function ‘void Fixed_Length_ICM_t::read(const char*)’: icm.cc:1491:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1491 | fread (line, sizeof (char), ID_STRING_LEN, fp); // skip the text header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ icm.cc:1519:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1519 | fread (permutation, sizeof (int), length, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ build-icm.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-icm.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/build-icm.o build-icm.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" build-icm.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ build-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e build-fixed.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/build-fixed.o build-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" build-fixed.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ score-fixed.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e score-fixed.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/score-fixed.o score-fixed.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" score-fixed.o ; \ fi ; ################### libGLMicm.a ##################### cd /<<PKGBUILDDIR>>/obj && \ ar rvs /<<PKGBUILDDIR>>/lib/libGLMicm.a icm.o build-icm.o build-fixed.o score-fixed.o ar: creating /<<PKGBUILDDIR>>/lib/libGLMicm.a a - icm.o a - build-icm.o a - build-fixed.o a - score-fixed.o ++++++++++++++++++++ build-icm ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-icm.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/build-icm -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/build-icm; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/build-icm -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-icm.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/build-icm; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ build-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "build-fixed.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/build-fixed -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/build-fixed -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib build-fixed.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/build-fixed; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ score-fixed ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "score-fixed.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/score-fixed -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/score-fixed -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib score-fixed.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ -lGLMicm \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/score-fixed; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM' ##### Making Directory /<<PKGBUILDDIR>>/src/Glimmer all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e test.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc test.cc \ | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \ fi ; if [ -e long-orfs.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc long-orfs.cc \ | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \ fi ; if [ -e glimmer3.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc glimmer3.cc \ | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \ fi ; if [ -e anomaly.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc anomaly.cc \ | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ anomaly.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e anomaly.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/anomaly.o anomaly.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" anomaly.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ glimmer3.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e glimmer3.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/glimmer3.o glimmer3.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" glimmer3.o ; \ fi ; glimmer3.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: glimmer3.cc:2607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2607 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ long-orfs.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e long-orfs.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/long-orfs.o long-orfs.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" long-orfs.o ; \ fi ; long-orfs.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: long-orfs.cc:1317:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1317 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ test.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e test.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/test.o test.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" test.o ; \ fi ; ++++++++++++++++++++ anomaly ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "anomaly.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/anomaly -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/anomaly; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/anomaly -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib anomaly.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/anomaly; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ glimmer3 ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "glimmer3.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/glimmer3 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a /<<PKGBUILDDIR>>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/glimmer3 -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib glimmer3.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a /<<PKGBUILDDIR>>/lib/libGLMicm.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/glimmer3; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ long-orfs ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "long-orfs.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/long-orfs -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/long-orfs -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib long-orfs.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/long-orfs; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ test ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "test.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/test -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/test; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/test -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib test.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/test; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer' ##### Making Directory /<<PKGBUILDDIR>>/src/Util all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. if [ -e window-acgt.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc window-acgt.cc \ | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \ fi ; if [ -e uncovered.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc uncovered.cc \ | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \ fi ; if [ -e start-codon-distrib.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc start-codon-distrib.cc \ | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \ fi ; if [ -e multi-extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc multi-extract.cc \ | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \ fi ; if [ -e extract.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc extract.cc \ | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \ fi ; if [ -e entropy-score.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc entropy-score.cc \ | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \ fi ; if [ -e entropy-profile.cc ] ; then \ /bin/sh -ec 'g++ -M -Wdate-time -D_FORTIFY_SOURCE=2 -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc entropy-profile.cc \ | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \ fi ; make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. @@@@@@@@@@@@@@@@@@@ entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-profile.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/entropy-profile.o entropy-profile.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" entropy-profile.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ entropy-score.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e entropy-score.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/entropy-score.o entropy-score.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" entropy-score.o ; \ fi ; entropy-score.cc: In function ‘void Read_Entropy_Profiles(const char*, bool&)’: entropy-score.cc:327:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 327 | fgets (line, MAX_LINE, fp); // skip header line | ~~~~~~^~~~~~~~~~~~~~~~~~~~ @@@@@@@@@@@@@@@@@@@ extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e extract.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/extract.o extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ multi-extract.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e multi-extract.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/multi-extract.o multi-extract.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" multi-extract.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e start-codon-distrib.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/start-codon-distrib.o start-codon-distrib.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" start-codon-distrib.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ uncovered.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e uncovered.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/uncovered.o uncovered.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" uncovered.o ; \ fi ; @@@@@@@@@@@@@@@@@@@ window-acgt.cc @@@@@@@@@@@@@@@@@@@@@ set -e ; \ if [ -e window-acgt.cc ] ; then \ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c \ -I/<<PKGBUILDDIR>>/inc -I/../SYS/inc -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/ICM -I/<<PKGBUILDDIR>>/src/Glimmer -I/<<PKGBUILDDIR>>/src/Util -I/<<PKGBUILDDIR>>/inc -o /<<PKGBUILDDIR>>/obj/window-acgt.o window-acgt.cc ; \ else \ /cm/cmtools/bin/links.pl /<<PKGBUILDDIR>>/obj \ " :/<<PKGBUILDDIR>>/obj" window-acgt.o ; \ fi ; ++++++++++++++++++++ entropy-profile ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-profile.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/entropy-profile -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/entropy-profile -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-profile.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/entropy-profile; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ entropy-score ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "entropy-score.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/entropy-score -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/entropy-score -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib entropy-score.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/entropy-score; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "extract.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/extract -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/extract; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/extract -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib extract.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ multi-extract ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "multi-extract.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/multi-extract -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/multi-extract -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib multi-extract.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/multi-extract; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ start-codon-distrib ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "start-codon-distrib.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/start-codon-distrib -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/start-codon-distrib -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib start-codon-distrib.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/start-codon-distrib; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ uncovered ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "uncovered.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/uncovered -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/uncovered; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/uncovered -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib uncovered.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/uncovered; \ exit ${STATUS}; \ fi; \ fi ; ++++++++++++++++++++ window-acgt ++++++++++++++++++++++ set -e ; \ STATUS=0 ; \ if [ -z "window-acgt.o" ] ; then \ cd /<<PKGBUILDDIR>>/obj; \ cc -o /<<PKGBUILDDIR>>/bin/window-acgt -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ else \ cd /<<PKGBUILDDIR>>/obj; \ g++ -o /<<PKGBUILDDIR>>/bin/window-acgt -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now \ -L/<<PKGBUILDDIR>>/lib -L/<<PKGBUILDDIR>>/lib -L/usr/lib -L/usr/shlib -L/usr/X11R6/lib -L/lib window-acgt.o /<<PKGBUILDDIR>>/lib/libGLMcommon.a \ \ || STATUS=${?} ; \ if [ ${STATUS} != 0 ] ; then \ rm -f /<<PKGBUILDDIR>>/bin/window-acgt; \ exit ${STATUS}; \ fi; \ fi ; make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util' TGT=libs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<<PKGBUILDDIR>>/src/Common all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common' ##### Making Directory /<<PKGBUILDDIR>>/src/ICM all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM' ##### Making Directory /<<PKGBUILDDIR>>/src/Glimmer all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer' ##### Making Directory /<<PKGBUILDDIR>>/src/Util all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util' TGT=progs echo "* Make Target is " all; * Make Target is all set -e ; for i in Common ICM Glimmer Util; do if [ -d $i ]; then cd $i; echo "##### Making Directory " `pwd` " " all " #####"; make all; cd ..; fi; done; ##### Making Directory /<<PKGBUILDDIR>>/src/Common all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Common' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Common' ##### Making Directory /<<PKGBUILDDIR>>/src/ICM all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/ICM' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/ICM' ##### Making Directory /<<PKGBUILDDIR>>/src/Glimmer all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Glimmer' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Glimmer' ##### Making Directory /<<PKGBUILDDIR>>/src/Util all ##### make[3]: Entering directory '/<<PKGBUILDDIR>>/src/Util' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/Util' make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' make[1]: Leaving directory '/<<PKGBUILDDIR>>' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/anomaly: Unknown DWARF DW_FORM_0x1f21 ef26740f435b942c27d27a909d94270e3cd412ea debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/start-codon-distrib: Unknown DWARF DW_FORM_0x1f20 78d494ee781dc45831b3dc8a3ac40b7edea7976f debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-icm: Unknown DWARF DW_FORM_0x1f20 df1eb53091adc1b2d95c3c822aacf8b268555fe5 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/long-orfs: Unknown DWARF DW_FORM_0x1f21 bf6f5d49264fcb6b935ad3b35c60f8fa4d64e5e3 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/score-fixed: Unknown DWARF DW_FORM_0x1f21 244d2dacc56f998a3b128c3026c1d2c25044ebc8 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/glimmer3: Unknown DWARF DW_FORM_0x1f20 ea49ba3a2109e878f259e10a3e9cf2c26d04e92c debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/multi-extract: Unknown DWARF DW_FORM_0x1f20 f517db59a736dfe3fb4b918d17289e8ae5b10f4c debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/test: Unknown DWARF DW_FORM_0x1f20 6543fd8ecc1e8af002067485e3634930dbdbbaaa debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-score: Unknown DWARF DW_FORM_0x1f20 09e1c7c9280789f2a908dcb5ea1bfc484fddcb03 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/build-fixed: Unknown DWARF DW_FORM_0x1f20 bba995317667b34d844b7cbd64819301b0aa13f2 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/uncovered: Unknown DWARF DW_FORM_0x1f20 ac389c18714e348bb30e436a6b9be89a3b205d77 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/entropy-profile: Unknown DWARF DW_FORM_0x1f20 ed054d20bd988f46358c8d824a7092683a252756 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/window-acgt: Unknown DWARF DW_FORM_0x1f20 ad804d1d6e8dc43e9fbf7e633d86037326923eb6 debugedit: debian/tigr-glimmer/usr/lib/tigr-glimmer/extract: Unknown DWARF DW_FORM_0x1f20 ab409f1cecfeac2939b19c40c6e35dd761a6069a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. INFO: pkgstriptranslations version 148 INFO: pkgstriptranslations version 148 pkgstriptranslations: processing tigr-glimmer (in debian/tigr-glimmer); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstriptranslations: processing tigr-glimmer-dbgsym (in debian/.debhelper/tigr-glimmer/dbgsym-root); do_strip: , oemstrip: /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>" /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>" /usr/bin/which: this version of `which' is deprecated; use `command -v' in scripts instead. pkgstripfiles: processing control file: debian/tigr-glimmer/DEBIAN/control, package tigr-glimmer, directory debian/tigr-glimmer pkgstripfiles: Truncating usr/share/doc/tigr-glimmer/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tigr-glimmer ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tigr-glimmer' in '../tigr-glimmer_3.02b-6_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/tigr-glimmer/dbgsym-root/DEBIAN/control, package tigr-glimmer-dbgsym, directory debian/.debhelper/tigr-glimmer/dbgsym-root dpkg-deb: building package 'tigr-glimmer-dbgsym' in 'debian/.debhelper/scratch-space/build-tigr-glimmer/tigr-glimmer-dbgsym_3.02b-6_amd64.deb'. Renaming tigr-glimmer-dbgsym_3.02b-6_amd64.deb to tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon <buildd@lcy01-amd64-028.buildd> >../tigr-glimmer_3.02b-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-10-19T10:00:20Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-6_amd64.changes: ----------------------------------- Format: 1.8 Date: Sat, 16 Oct 2021 20:37:42 +0200 Source: tigr-glimmer Binary: tigr-glimmer Built-For-Profiles: noudeb Architecture: amd64 Version: 3.02b-6 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon <buildd@lcy01-amd64-028.buildd> Changed-By: Étienne Mollier <emollier@debian.org> Description: tigr-glimmer - Gene detection in archea and bacteria Closes: 984367 Changes: tigr-glimmer (3.02b-6) unstable; urgency=medium . * d/rules: prevent CXXDEFS from setting __cplusplus (Closes: #984367) * d/control: add myself to uploaders * d/watch: fall back to http protocol to repair scan * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) Checksums-Sha1: 53aaf44ea06f715d900a84238520ca3888de7550 987968 tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb 27e771edef7b4bf292c494ccd7b016f9efde2532 5766 tigr-glimmer_3.02b-6_amd64.buildinfo 8395768bb3bec975e168a9483c6b4b8e2be76af5 273796 tigr-glimmer_3.02b-6_amd64.deb Checksums-Sha256: 7321356fb61501de2305ff3c3364479bd6cadb7023ba193b2bade1e85f316af0 987968 tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb e526384027da53cda2aeb3e0d2a8e7a5931c79afb6d6c8886d1ca5bcc35e7329 5766 tigr-glimmer_3.02b-6_amd64.buildinfo 43ca2fb988c3a44c25fee654419c5414e48339ae562dfa57d4153fbe1292ddd6 273796 tigr-glimmer_3.02b-6_amd64.deb Files: d5703c9dcf052019a4091a6594b2845f 987968 debug optional tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb 34b4c7d2aa23921125fb6e91e9e86a22 5766 science optional tigr-glimmer_3.02b-6_amd64.buildinfo 72fa589dffb3cd8b8bb69bc9a8db11c9 273796 science optional tigr-glimmer_3.02b-6_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: tigr-glimmer Binary: tigr-glimmer tigr-glimmer-dbgsym Architecture: amd64 Version: 3.02b-6 Checksums-Md5: d5703c9dcf052019a4091a6594b2845f 987968 tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb 72fa589dffb3cd8b8bb69bc9a8db11c9 273796 tigr-glimmer_3.02b-6_amd64.deb Checksums-Sha1: 53aaf44ea06f715d900a84238520ca3888de7550 987968 tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb 8395768bb3bec975e168a9483c6b4b8e2be76af5 273796 tigr-glimmer_3.02b-6_amd64.deb Checksums-Sha256: 7321356fb61501de2305ff3c3364479bd6cadb7023ba193b2bade1e85f316af0 987968 tigr-glimmer-dbgsym_3.02b-6_amd64.ddeb 43ca2fb988c3a44c25fee654419c5414e48339ae562dfa57d4153fbe1292ddd6 273796 tigr-glimmer_3.02b-6_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 19 Oct 2021 10:00:20 +0000 Build-Path: /<<PKGBUILDDIR>> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.4-2), autopoint (= 0.21-4ubuntu3), autotools-dev (= 20180224.1+nmu1), base-files (= 12ubuntu1), base-passwd (= 3.5.52), bash (= 5.1-3ubuntu2), binutils (= 2.37-7ubuntu1), binutils-common (= 2.37-7ubuntu1), binutils-x86-64-linux-gnu (= 2.37-7ubuntu1), bsdextrautils (= 2.36.1-8ubuntu2), bsdutils (= 1:2.36.1-8ubuntu2), build-essential (= 12.9ubuntu2), bzip2 (= 1.0.8-4ubuntu4), coreutils (= 8.32-4ubuntu3), cpp (= 4:11.2.0-1ubuntu1), cpp-11 (= 11.2.0-7ubuntu2), dash (= 0.5.11+git20210120+802ebd4-1build1), debconf (= 1.5.77), debhelper (= 13.3.4ubuntu2), debianutils (= 5.5-1), debugedit (= 1:5.0-0ubuntu2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.12.0-1), diffutils (= 1:3.8-0ubuntu1), dpkg (= 1.20.9ubuntu2), dpkg-dev (= 1.20.9ubuntu2), dwz (= 0.14-1build1), file (= 1:5.39-3build1), findutils (= 4.8.0-1ubuntu2), g++ (= 4:11.2.0-1ubuntu1), g++-11 (= 11.2.0-7ubuntu2), gcc (= 4:11.2.0-1ubuntu1), gcc-11 (= 11.2.0-7ubuntu2), gcc-11-base (= 11.2.0-7ubuntu2), gettext (= 0.21-4ubuntu3), gettext-base (= 0.21-4ubuntu3), grep (= 3.7-0ubuntu1), groff-base (= 1.22.4-7), gzip (= 1.10-4ubuntu2), hostname (= 3.23ubuntu1), init-system-helpers (= 1.60build1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-10ubuntu2), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-7ubuntu2), libatomic1 (= 11.2.0-7ubuntu2), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0-2ubuntu3), libaudit1 (= 1:3.0-2ubuntu3), libbinutils (= 2.37-7ubuntu1), libblkid1 (= 2.36.1-8ubuntu2), libbz2-1.0 (= 1.0.8-4ubuntu4), libc-bin (= 2.34-0ubuntu3), libc-dev-bin (= 2.34-0ubuntu3), libc6 (= 2.34-0ubuntu3), libc6-dev (= 2.34-0ubuntu3), libcap-ng0 (= 0.7.9-2.2build2), libcap2 (= 1:2.44-1build2), libcc1-0 (= 11.2.0-7ubuntu2), libcom-err2 (= 1.46.3-1ubuntu3), libcrypt-dev (= 1:4.4.18-4ubuntu2), libcrypt1 (= 1:4.4.18-4ubuntu2), libctf-nobfd0 (= 2.37-7ubuntu1), libctf0 (= 2.37-7ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.8ubuntu2), libdebconfclient0 (= 0.256ubuntu4), libdebhelper-perl (= 13.3.4ubuntu2), libdpkg-perl (= 1.20.9ubuntu2), libdw1 (= 0.185-2), libelf1 (= 0.185-2), libfile-stripnondeterminism-perl (= 1.12.0-1), libgcc-11-dev (= 11.2.0-7ubuntu2), libgcc-s1 (= 11.2.0-7ubuntu2), libgcrypt20 (= 1.8.7-5ubuntu2), libgdbm-compat4 (= 1.21-1), libgdbm6 (= 1.21-1), libgmp10 (= 2:6.2.1+dfsg-1ubuntu3), libgomp1 (= 11.2.0-7ubuntu2), libgpg-error0 (= 1.42-3), libgssapi-krb5-2 (= 1.18.3-7), libicu67 (= 67.1-7ubuntu1), libisl23 (= 0.24-2), libitm1 (= 11.2.0-7ubuntu2), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2ubuntu2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-7ubuntu2), liblz4-1 (= 1.9.3-2build1), liblzma5 (= 5.2.5-2build1), libmagic-mgc (= 1:5.39-3build1), libmagic1 (= 1:5.39-3build1), libmount1 (= 2.36.1-8ubuntu2), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3build2), libnsl-dev (= 1.3.0-2build1), libnsl2 (= 1.3.0-2build1), libpam-modules (= 1.3.1-5ubuntu11), libpam-modules-bin (= 1.3.1-5ubuntu11), libpam-runtime (= 1.3.1-5ubuntu11), libpam0g (= 1.3.1-5ubuntu11), libpcre2-8-0 (= 10.37-0ubuntu2), libpcre3 (= 2:8.39-13build4), libperl5.32 (= 5.32.1-3ubuntu3), libpipeline1 (= 1.5.3-1build1), libquadmath0 (= 11.2.0-7ubuntu2), libseccomp2 (= 2.5.1-1ubuntu2), libselinux1 (= 3.1-3build3), libsigsegv2 (= 2.13-1ubuntu2), libsmartcols1 (= 2.36.1-8ubuntu2), libssl1.1 (= 1.1.1l-1ubuntu1), libstdc++-11-dev (= 11.2.0-7ubuntu2), libstdc++6 (= 11.2.0-7ubuntu2), libsub-override-perl (= 0.09-2), libsystemd0 (= 248.3-1ubuntu8), libtinfo6 (= 6.2+20210905-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15build1), libtsan0 (= 11.2.0-7ubuntu2), libubsan1 (= 11.2.0-7ubuntu2), libuchardet0 (= 0.0.7-1build1), libudev1 (= 248.3-1ubuntu8), libunistring2 (= 0.9.10-6), libuuid1 (= 2.36.1-8ubuntu2), libxml2 (= 2.9.12+dfsg-5), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.13.0-19.19), login (= 1:4.8.1-1ubuntu9), lsb-base (= 11.1.0ubuntu3), lto-disabled-list (= 16), m4 (= 1.4.18-5ubuntu1), make (= 4.3-4ubuntu2), man-db (= 2.9.4-2build1), mawk (= 1.3.4.20200120-2build1), ncurses-base (= 6.2+20210905-1), ncurses-bin (= 6.2+20210905-1), patch (= 2.7.6-7build1), perl (= 5.32.1-3ubuntu3), perl-base (= 5.32.1-3ubuntu3), perl-modules-5.32 (= 5.32.1-3ubuntu3), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu5), sed (= 4.7-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 2.96-7ubuntu2), tar (= 1.34+dfsg-1build2), util-linux (= 2.36.1-8ubuntu2), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634409462" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ tigr-glimmer_3.02b-6_amd64.deb ------------------------------ new Debian package, version 2.0. size 273796 bytes: control archive=1652 bytes. 829 bytes, 18 lines control 2466 bytes, 34 lines md5sums Package: tigr-glimmer Version: 3.02b-6 Architecture: amd64 Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com> Original-Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Installed-Size: 640 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libstdc++6 (>= 11) Section: science Priority: optional Homepage: http://ccb.jhu.edu/software/glimmer/index.shtml Description: Gene detection in archea and bacteria Developed by the TIGR institute this software detects coding sequences in bacteria and archea. . Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. drwxr-xr-x root/root 0 2021-10-16 18:37 ./ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/bin/ -rwxr-xr-x root/root 412 2020-05-11 17:27 ./usr/bin/tigr-glimmer -rwxr-xr-x root/root 686 2020-05-11 17:27 ./usr/bin/tigr-run-glimmer3 drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/lib/tigr-glimmer/ -rwxr-xr-x root/root 27120 2021-10-16 18:37 ./usr/lib/tigr-glimmer/anomaly -rwxr-xr-x root/root 35232 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-fixed -rwxr-xr-x root/root 35664 2021-10-16 18:37 ./usr/lib/tigr-glimmer/build-icm -rwxr-xr-x root/root 23152 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-profile -rwxr-xr-x root/root 27728 2021-10-16 18:37 ./usr/lib/tigr-glimmer/entropy-score -rwxr-xr-x root/root 23200 2021-10-16 18:37 ./usr/lib/tigr-glimmer/extract -rwxr-xr-x root/root 101856 2021-10-16 18:37 ./usr/lib/tigr-glimmer/glimmer3 -rwxr-xr-x root/root 52544 2021-10-16 18:37 ./usr/lib/tigr-glimmer/long-orfs -rwxr-xr-x root/root 23200 2021-10-16 18:37 ./usr/lib/tigr-glimmer/multi-extract -rwxr-xr-x root/root 27024 2021-10-16 18:37 ./usr/lib/tigr-glimmer/score-fixed -rwxr-xr-x root/root 23200 2021-10-16 18:37 ./usr/lib/tigr-glimmer/start-codon-distrib -rwxr-xr-x root/root 14736 2021-10-16 18:37 ./usr/lib/tigr-glimmer/test -rwxr-xr-x root/root 23136 2021-10-16 18:37 ./usr/lib/tigr-glimmer/uncovered -rwxr-xr-x root/root 23120 2021-10-16 18:37 ./usr/lib/tigr-glimmer/window-acgt drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/ -rw-r--r-- root/root 228 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/NEWS.Debian.gz -rw-r--r-- root/root 957 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/README.Debian -rw-r--r-- root/root 1527 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/changelog.Debian.gz -rw-r--r-- root/root 1062 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/copyright drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/examples/ -rw-r--r-- root/root 2269 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/examples/example.fa drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/doc/tigr-glimmer/glimmer2_docs/ -rw-r--r-- root/root 2275 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/README.gz -rw-r--r-- root/root 2670 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/build-icm.readme -rw-r--r-- root/root 2126 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/extract.readme -rw-r--r-- root/root 5006 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/glimmer2.readme.gz -rw-r--r-- root/root 2480 2020-05-11 17:27 ./usr/share/doc/tigr-glimmer/glimmer2_docs/long-orfs.readme.gz -rw-r--r-- root/root 131266 2013-02-05 20:32 ./usr/share/doc/tigr-glimmer/notes.pdf.gz drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-16 18:37 ./usr/share/man/man1/ -rw-r--r-- root/root 452 2021-10-16 18:37 ./usr/share/man/man1/tigr-anomaly.1.gz -rw-r--r-- root/root 1379 2021-10-16 18:37 ./usr/share/man/man1/tigr-build-icm.1.gz -rw-r--r-- root/root 1129 2021-10-16 18:37 ./usr/share/man/man1/tigr-extract.1.gz -rw-r--r-- root/root 805 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer.1.gz -rw-r--r-- root/root 2320 2021-10-16 18:37 ./usr/share/man/man1/tigr-glimmer3.1.gz -rw-r--r-- root/root 2387 2021-10-16 18:37 ./usr/share/man/man1/tigr-long-orfs.1.gz -rw-r--r-- root/root 526 2021-10-16 18:37 ./usr/share/man/man1/tigr-run-glimmer3.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<<BUILDDIR>> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: n/a Build-Time: 52 Distribution: jammy-proposed Host Architecture: amd64 Install-Time: 8 Job: tigr-glimmer_3.02b-6.dsc Machine Architecture: amd64 Package: tigr-glimmer Package-Time: 61 Source-Version: 3.02b-6 Space: n/a Status: successful Version: 3.02b-6 -------------------------------------------------------------------------------- Finished at 2021-10-19T10:00:20Z Build needed 00:01:01, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=amd64 PACKAGEBUILD-22308402 Scanning for processes to kill in build PACKAGEBUILD-22308402