r-bioc-genomicfeatures 1.30.0+dfsg-1 (s390x binary) in ubuntu cosmic
A set of tools and methods for making and manipulating transcript
centric annotations. With these tools the user can easily download the
genomic locations of the transcripts, exons and cds of a given organism,
from either the UCSC Genome Browser or a BioMart database (more sources
will be supported in the future). This information is then stored in a
local database that keeps track of the relationship between transcripts,
exons, cds and genes. Flexible methods are provided for extracting the
desired features in a convenient format.
Details
- Package version:
- 1.30.0+dfsg-1
- Status:
- Superseded
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-genomicfeatures 1.30.0+dfsg-1 in ubuntu bionic PROPOSED produced
these files:
- r-bioc-genomicfeatures_1.30.0+dfsg-1_all.deb (959.0 KiB)
Package relationships
- Depends on:
- r-api-3.4
- r-base-core (>= 3.4.2-1ubuntu4)
- r-bioc-annotationdbi (>= 1.33.15)
- r-bioc-biobase (>= 2.15.1)
- r-bioc-biocgenerics (>= 0.1.0)
- r-bioc-biomart (>= 2.17.1)
- r-bioc-biostrings (>= 2.23.3)
- r-bioc-genomeinfodb (>= 1.13.1)
- r-bioc-genomicranges (>= 1.29.14)
- r-bioc-iranges (>= 2.11.16)
- r-bioc-rtracklayer (>= 1.29.24)
- r-bioc-s4vectors (>= 0.9.47)
- r-bioc-xvector
- r-cran-dbi
- r-cran-rcurl
- r-cran-rmysql
- r-cran-rsqlite (>= 2.0)
