Binary package “libfastahack0” in ubuntu focal
library for indexing and sequence extraction from FASTA files (lib)
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
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Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
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This package contains the dynamic library.
Source package
Published versions
- libfastahack0 1.0.0+dfsg-5build1 in amd64 (Proposed)
- libfastahack0 1.0.0+dfsg-5build1 in amd64 (Release)
- libfastahack0 1.0.0+dfsg-5build1 in arm64 (Proposed)
- libfastahack0 1.0.0+dfsg-5build1 in arm64 (Release)
- libfastahack0 1.0.0+dfsg-5build1 in armhf (Proposed)
- libfastahack0 1.0.0+dfsg-5build1 in armhf (Release)
- libfastahack0 1.0.0+dfsg-5build1 in ppc64el (Proposed)
- libfastahack0 1.0.0+dfsg-5build1 in ppc64el (Release)
- libfastahack0 1.0.0+dfsg-5build1 in riscv64 (Release)
- libfastahack0 1.0.0+dfsg-5build1 in s390x (Proposed)
- libfastahack0 1.0.0+dfsg-5build1 in s390x (Release)