libseqlib1 binary package in Ubuntu Focal arm64
C++ API and command line tool that provides a rapid and user-friendly
interface to BAM/SAM/CRAM files, global sequence alignment operations
and sequence assembly. Four C libraries perform core operations in
SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment
and Fermi for error correction and sequence assembly. Benchmarking
indicates that SeqLib has lower CPU and memory requirements than leading
C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct
and assemble reads from a CRAM file and then align with BWA-MEM.
SeqLib also provides additional capabilities, including chromosome-aware
interval queries and read plotting. Command line tools are available for
performing integrated error correction, micro-assemblies and alignment.
Publishing history
| Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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| 2020-02-16 01:03:14 UTC | Published | Ubuntu Focal arm64 | release | universe | libs | Optional | 1.1.2+dfsg-6 | ||
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| Deleted | Ubuntu Focal arm64 | proposed | universe | libs | Optional | 1.1.2+dfsg-6 | |||
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| 2020-02-16 01:03:19 UTC | Superseded | Ubuntu Focal arm64 | release | universe | libs | Optional | 1.1.2+dfsg-5 | ||
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| 2020-02-17 06:10:10 UTC | Deleted | Ubuntu Focal arm64 | proposed | universe | libs | Optional | 1.1.2+dfsg-5 | ||
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| 2019-12-19 00:33:19 UTC | Superseded | Ubuntu Focal arm64 | release | universe | libs | Optional | 1.1.2+dfsg-4 | ||
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