Ubuntu

fastahack binary package in Ubuntu Focal s390x

  1. Focal (20.04)
  2. s390x
  3. fastahack

 fastahack is a small application for indexing and extracting sequences and
 subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
 reader and indexer that can be embedded into applications which would benefit
 from directly reading subsequences from FASTA files. The library automatically
 handles index file generation and use.
 .
 Features:
  * FASTA index (.fai) generation for FASTA files
  * Sequence extraction
  * Subsequence extraction
  * Sequence statistics (currently only entropy is provided)
 .
 Sequence and subsequence extraction use fseek64 to provide fastest-possible
 extraction without RAM-intensive file loading operations. This makes fastahack
 a useful tool for bioinformaticists who need to quickly extract many
 subsequences from a reference FASTA sequence.

Publishing history

Date Status Target Pocket Component Section Priority Phased updates Version
  2020-02-08 21:18:14 UTC Published Ubuntu Focal s390x release universe science Optional 1.0.0+dfsg-5build1
  • Published
  • Copied from ubuntu focal-proposed s390x in Primary Archive for Ubuntu
  Deleted Ubuntu Focal s390x proposed universe science Optional 1.0.0+dfsg-5build1
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-02-08 21:18:20 UTC Superseded Ubuntu Focal s390x release universe science Optional 1.0.0+dfsg-5
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of libfastahack 1.0.0+dfsg-5build1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed s390x in Primary Archive for Ubuntu
  2020-02-10 00:10:10 UTC Deleted Ubuntu Focal s390x proposed universe science Optional 1.0.0+dfsg-5
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-01-11 02:38:21 UTC Superseded Ubuntu Focal s390x release universe science Optional 1.0.0+dfsg-4
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of libfastahack 1.0.0+dfsg-5 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed s390x in Primary Archive for Ubuntu
  2020-01-12 06:10:08 UTC Deleted Ubuntu Focal s390x proposed universe science Optional 1.0.0+dfsg-4
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-01-10 00:48:24 UTC Superseded Ubuntu Focal s390x release universe science Optional 1.0.0+dfsg-2ubuntu1
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of libfastahack 1.0.0+dfsg-4 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu focal-proposed s390x in Primary Archive for Ubuntu
  2020-01-11 06:10:09 UTC Deleted Ubuntu Focal s390x proposed universe science Optional 1.0.0+dfsg-2ubuntu1
  • Removed from disk .
  • Removal requested .
  • Deleted by Ubuntu Archive Robot

    moved to Release

  • Published
  2020-01-08 06:48:28 UTC Superseded Ubuntu Focal s390x proposed universe science Optional 1.0.0+dfsg-2
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of libfastahack 1.0.0+dfsg-2ubuntu1 in ubuntu focal PROPOSED
  • Published
  2020-01-08 09:48:18 UTC Superseded Ubuntu Focal s390x release universe science Optional 0.0+git20160702.bbc645f+dfsg-6
  • Removed from disk .
  • Removal requested .
  • Superseded by s390x build of libfastahack 1.0.0+dfsg-2ubuntu1 in ubuntu focal PROPOSED
  • Published
  • Copied from ubuntu disco-proposed s390x in Primary Archive for Ubuntu

Source package