muscle 3.60-1 (lpia binary) in ubuntu gutsy

 MUSCLE is a multiple alignment program for protein sequences. MUSCLE
 stands for multiple sequence comparison by log-expectation. In the
 authors tests, MUSCLE achieved the highest scores of all tested
 programs on several alignment accuracy benchmarks, and is also one of
 the fastest programs out there.
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  Homepage: http://www.drive5.com/muscle/