r-bioc-gviz 1.38.3+dfsg-1 (amd64 binary) in ubuntu jammy
Genomic data analyses requires integrated visualization of known
genomic information and new experimental data. Gviz uses the biomaRt and
the rtracklayer packages to perform live annotation queries to Ensembl
and UCSC and translates this to e.g. gene/transcript structures in
viewports of the grid graphics package. This results in genomic
information plotted together with your data.
Details
- Package version:
- 1.38.3+dfsg-1
- Status:
- Published
- Component:
- universe
- Priority:
- Optional
Downloadable files
amd64 build of r-bioc-gviz 1.38.3+dfsg-1 in ubuntu jammy PROPOSED produced
these files:
- r-bioc-gviz_1.38.3+dfsg-1_all.deb (5.1 MiB)
Package relationships
- Depends on:
- r-api-4.0
- r-api-bioc-3.14
- r-base-core (>= 4.1.2-1ubuntu1)
- r-bioc-annotationdbi (>= 1.27.5)
- r-bioc-biobase (>= 2.15.3)
- r-bioc-biocgenerics (>= 0.11.3)
- r-bioc-biomart (>= 2.11.0)
- r-bioc-biostrings (>= 2.33.11)
- r-bioc-biovizbase (>= 1.13.8)
- r-bioc-bsgenome (>= 1.33.1)
- r-bioc-ensembldb (>= 2.11.3)
- r-bioc-genomeinfodb (>= 1.1.3)
- r-bioc-genomicalignments (>= 1.1.16)
- r-bioc-genomicfeatures (>= 1.17.22)
- r-bioc-genomicranges (>= 1.17.20)
- r-bioc-iranges (>= 1.99.18)
- r-bioc-rsamtools (>= 1.17.28)
- r-bioc-rtracklayer (>= 1.25.13)
- r-bioc-s4vectors (>= 0.9.25)
- r-bioc-xvector (>= 0.5.7)
- r-cran-digest (>= 0.6.8)
- r-cran-lattice
- r-cran-latticeextra (>= 0.6-26)
- r-cran-matrixstats (>= 0.8.14)
- r-cran-rcolorbrewer
