trnascan-se-common 2.0.7+ds-1 (amd64 binary) in ubuntu jammy
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
.
This package contains the architecture-
Details
- Package version:
- 2.0.7+ds-1
- Status:
- Superseded
- Component:
- multiverse
- Priority:
- Optional
Downloadable files
- trnascan-se-common_2.0.7+ds-1_all.deb (2.2 MiB)