r-bioc-grohmm binary package in Ubuntu Kinetic arm64
This BioConductor package provides a pipeline for the analysis of GRO-
seq data. Among the more advanced features, r-bioc-grohmm predicts the
boundaries of transcriptional activity across the genome de novo using a
two-state hidden Markov model (HMM).
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The used model essentially divides the genome into transcribed and non-
transcribed regions in a strand specific manner. HMMs are used to
identify the leading edge of Pol II at genes activated by a stimulus in
GRO-seq time course data. This approach allows the genome-wide
interrogation of transcription rates in cells.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2022-05-23 23:04:22 UTC | Published | Ubuntu Kinetic arm64 | release | universe | gnu-r | Optional | 1.30.1-1 | ||
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Deleted | Ubuntu Kinetic arm64 | proposed | universe | gnu-r | Optional | 1.30.1-1 | |||
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2022-05-19 17:50:43 UTC | Superseded | Ubuntu Kinetic arm64 | proposed | universe | gnu-r | Optional | 1.29.1-1 | ||
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2022-05-23 23:05:24 UTC | Superseded | Ubuntu Kinetic arm64 | release | universe | gnu-r | Optional | 1.28.0-1 | ||
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