bwa 0.5.9-2 (i386 binary) in ubuntu oneiric

 Burrows-Wheeler Aligner (BWA) is a program that aligns relatively short
 nucleotide sequences against a long reference sequence such as the human
 genome. It implements two algorithms, bwa-short and BWA-SW. The former works
 for query sequences shorter than 200 bp and the latter for longer sequences up
 to around 100 kbp. Both algorithms do gapped alignment. They are usually more
 accurate and faster on queries with low error rates.