Ubuntu

mafft binary package in Ubuntu Trusty amd64

MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
  * L-INS-i (probably most accurate; recommended for <200 sequences;
    iterative refinement method incorporating local pairwise alignment
    information),
  * G-INS-i (suitable for sequences of similar lengths; recommended for
    <200 sequences; iterative refinement method incorporating global
    pairwise alignment information),
  * E-INS-i (suitable for sequences containing large unalignable regions;
    recommended for <200 sequences),
and five speed-oriented methods:
  * FFT-NS-i (iterative refinement method; two cycles only),
  * FFT-NS-i (iterative refinement method; max. 1000 iterations),
  * FFT-NS-2 (fast; progressive method),
  * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
    method with a rough guide tree),
  * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
    method with the PartTree algorithm).

Publishing history

	Date	Status	Target	Pocket	Component	Section	Priority	Version
	2014-04-27 18:10:10 UTC	Deleted	Ubuntu Trusty amd64	proposed	universe	science	Optional	7.130-1
Removed from disk on 2014-04-27. Removal requested on 2014-04-26. Deleted on 2014-04-26 by Adam Conrad Moved to utopic-proposed Published on 2014-01-19
	2014-01-19 05:18:54 UTC	Superseded	Ubuntu Trusty amd64	proposed	universe	science	Optional	7.127-1
Removed from disk on 2014-01-20. Removal requested on 2014-01-20. Superseded on 2014-01-19 by amd64 build of mafft 7.130-1 in ubuntu trusty PROPOSED Published on 2013-11-30
	2013-11-30 16:43:21 UTC	Superseded	Ubuntu Trusty amd64	proposed	universe	science	Optional	7.123-1ubuntu1
Removed from disk on 2013-12-01. Removal requested on 2013-12-01. Superseded on 2013-11-30 by amd64 build of mafft 7.127-1 in ubuntu trusty PROPOSED Published on 2013-10-29
	2013-10-23 16:48:29 UTC	Published	Ubuntu Trusty amd64	release	universe	science	Optional	7.123-1
Published on 2013-10-23 Copied from ubuntu trusty-proposed amd64 in Primary Archive for Ubuntu
		Deleted	Ubuntu Trusty amd64	proposed	universe	science	Optional	7.123-1
Removal requested on 2013-10-23. Deleted on 2013-10-23 by Ubuntu Archive Robot moved to release Published on 2013-10-22
	2013-10-23 16:49:50 UTC	Superseded	Ubuntu Trusty amd64	release	universe	science	Optional	6.940-1
Removed from disk on 2015-05-01. Removal requested on 2013-10-24. Superseded on 2013-10-23 by amd64 build of mafft 7.123-1 in ubuntu trusty PROPOSED Published on 2013-10-18 Copied from ubuntu raring-proposed amd64 in Primary Archive for Ubuntu

Source package

mafft package in Ubuntu