t-coffee binary package in Ubuntu Trusty armhf
T-Coffee is a multiple sequence alignment package. Given a set of
sequences (Proteins or DNA), T-Coffee generates a multiple sequence
alignment. Version 2.00 and higher can mix sequences and structures.
.
T-Coffee allows the combination of a collection of multiple/pairwise,
global or local alignments into a single model. It can also
estimate the level of consistency of each position within the new
alignment with the rest of the alignments. See the pre-print for more
information
.
T-Coffee has a special called M-Coffee that makes it possible to combine the
output of many multiple sequence alignment packages. In its published version,
it uses MUSCLE, PROBCONS, POA, DiAlign-TS, MAFFT, Clustal W, PCMA and
T-Coffee. A special version has been made for Debian, DM-Coffee, that uses
only free software by replacing Clustal W by Kalign. Using the 8 Methods of
M-Coffee can sometimes be a bit heavy. You can use a subset of your favorite
methods if you prefer.
Publishing history
Date | Status | Target | Component | Section | Priority | Phased updates | Version | ||
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2013-11-27 18:38:24 UTC | Published | Ubuntu Trusty armhf | release | universe | science | Optional | 10.00.r1613-1 | ||
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Deleted | Ubuntu Trusty armhf | proposed | universe | science | Optional | 10.00.r1613-1 | |||
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2013-11-27 18:40:23 UTC | Superseded | Ubuntu Trusty armhf | release | universe | science | Optional | 9.03.r1318-1 | ||
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