trnascan-se 1.3.1-1 (armhf binary) in ubuntu artful
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
Details
- Package version:
- 1.3.1-1
- Status:
- Obsolete
- Component:
- multiverse
- Priority:
- Optional
Downloadable files
armhf build of trnascan-se 1.3.1-1 in ubuntu artful PROPOSED produced
these files:
- trnascan-se_1.3.1-1_armhf.deb (116.6 KiB)
Package relationships
- Depends on:
- Suggests:
